lnc-ALOX12-2 Gene (RNA Gene)

 

GC17P006901
GIFtS:
2

Aliases for lnc-ALOX12-2 Gene

Subcategory (RNA class) for lnc-ALOX12-2 Gene

lncRNA

Quality Score for this RNA gene is

12

Aliases for lnc-ALOX12-2 Gene

  • NONHSAG020672 94
  • Lnc-ALOX12-2 170

No data available for External Ids for lnc-ALOX12-2 Gene

Summaries for lnc-ALOX12-2 Gene

GeneCards Summary for lnc-ALOX12-2 Gene

lnc-ALOX12-2 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for lnc-ALOX12-2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for lnc-ALOX12-2 Gene

Genomics for lnc-ALOX12-2 Gene

GeneHancer (GH) Regulatory Elements for lnc-ALOX12-2 Gene

Promoters and enhancers for lnc-ALOX12-2 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH17J006907 Enhancer 0.7 ENCODE 0.4 +6.4 6359 0.2 HLF CEBPG ZNF644 CEBPA GATAD2A CEBPB RCOR1 EP300 RFX5 SMC3 lnc-ALOX12-2 piR-50852-059 ALOX12P2 lnc-ALOX12-1 ALOX12-AS1
GH17J006914 Enhancer 0.6 ENCODE 0.4 +13.0 12989 0.2 CTCF CC2D1A RAD21 ARID2 REST TRIM22 ZNF143 MTA2 TARDBP MAZ ALOX12 ALOX12-AS1 RNASEK RNASEK-C17orf49 BCL6B SLC16A11 MIR195 C17orf100 MED31 SLC13A5
GH17J006893 Promoter 0.4 Ensembl 0.4 -7.4 -7357 0.2 ZFHX2 SLC13A5 ALOX12P2 lnc-ALOX12-2 piR-48209-267 lnc-ALOX12-1 ALOX12-AS1
GH17J006903 Enhancer 0.3 Ensembl 0.6 +2.4 2443 0.2 POLR2A lnc-ALOX12-2 piR-50852-059 ALOX12P2 lnc-ALOX12-1 ALOX12-AS1
GH17J006912 Enhancer 0.5 Ensembl 0.4 +10.1 10118 0.4 CTCF RAD21 TRIM22 SMC3 CUX1 piR-50852-059 lnc-ALOX12-2 ALOX12P2 lnc-ALOX12-1 ALOX12-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around lnc-ALOX12-2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for lnc-ALOX12-2 Gene

Genomic Locations for lnc-ALOX12-2 Gene
chr17:6,901,058-6,902,359
(GRCh38/hg38)
Size:
1,302 bases
Orientation:
Plus strand

Genomic View for lnc-ALOX12-2 Gene

Genes around lnc-ALOX12-2 on UCSC Golden Path with GeneCards custom track

lnc-ALOX12-2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for lnc-ALOX12-2 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for lnc-ALOX12-2 Gene

Proteins for lnc-ALOX12-2 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for lnc-ALOX12-2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for lnc-ALOX12-2 Gene

Domains & Families for lnc-ALOX12-2 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for lnc-ALOX12-2 Gene

Function for lnc-ALOX12-2 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for lnc-ALOX12-2 Gene

Localization for lnc-ALOX12-2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for lnc-ALOX12-2 Gene

Pathways & Interactions for lnc-ALOX12-2 Gene

PathCards logo

SuperPathways for lnc-ALOX12-2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for lnc-ALOX12-2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for lnc-ALOX12-2 Gene

Drugs & Compounds for lnc-ALOX12-2 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for lnc-ALOX12-2 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for lnc-ALOX12-2 Gene

(1) RNACentral transcripts :
(1) NONCODE transcripts :
(1) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for lnc-ALOX12-2 Gene

No ASD Table

Relevant External Links for lnc-ALOX12-2 Gene

GeneLoc Exon Structure for
lnc-ALOX12-2

Expression for lnc-ALOX12-2 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for lnc-ALOX12-2 Gene

Orthologs for lnc-ALOX12-2 Gene

No data available for Orthologs and Evolution for lnc-ALOX12-2 Gene

Paralogs for lnc-ALOX12-2 Gene

No data available for Paralogs for lnc-ALOX12-2 Gene

Variants for lnc-ALOX12-2 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for lnc-ALOX12-2 Gene

Disorders for lnc-ALOX12-2 Gene

No disorders were found for lnc-ALOX12-2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for lnc-ALOX12-2 Gene

Publications for lnc-ALOX12-2 Gene

No publications were found for lnc-ALOX12-2 Gene.

No data available for External Links for lnc-ALOX12-2 Gene

Products for lnc-ALOX12-2 Gene

Sources for lnc-ALOX12-2 Gene