Aliases for lnc-AKAP1-5 Gene

Subcategory (RNA class) for lnc-AKAP1-5 Gene

lncRNA

Quality Score for this RNA gene is

12

Aliases for lnc-AKAP1-5 Gene

  • HSALNG0117633 169
  • Lnc-AKAP1-5 170

No data available for External Ids for lnc-AKAP1-5 Gene

Summaries for lnc-AKAP1-5 Gene

GeneCards Summary for lnc-AKAP1-5 Gene

lnc-AKAP1-5 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for lnc-AKAP1-5 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for lnc-AKAP1-5 Gene

Genomics for lnc-AKAP1-5 Gene

GeneHancer (GH) Regulatory Elements for lnc-AKAP1-5 Gene

Promoters and enhancers for lnc-AKAP1-5 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J057281 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 -34.1 -34058 8.8 ZBTB40 MLX RBPJ NR2F1 NR2F6 CREB1 MIXL1 MYC MAX TEAD4 ENSG00000279555 MSI2 lnc-AKAP1-5
GH17J057300 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 -7.6 -7581 20.6 ZNF121 MNT NFIB MAFK CREB1 ZIC2 YBX1 GATAD2A HES1 ZNF316 MSI2 MKS1 VEZF1 lnc-AKAP1-5 ENSG00000279555
GH17J057325 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +11.3 11309 11.2 ZBTB40 HLF ARID3A IKZF1 DPF2 CREB1 YBX1 RXRA ZBTB33 GATAD2A SRSF1 COIL MKS1 TRIM25 MSI2 VEZF1 DYNLL2 lnc-AKAP1-5 lnc-CCDC182-5
GH17J057336 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.3 +20.7 20720 6.8 GATA3 SMARCE1 NR2F6 ZNF217 ZNF133 ELF1 MAX TEAD4 ZNF652 ZNF148 MKS1 MSI2 SRSF1 COIL DGKE ENSG00000264112 lnc-AKAP1-5 lnc-CCDC182-5
GH17J057293 Promoter/Enhancer 1.3 EPDnew ENCODE dbSUPER 0.3 -24.5 -24478 2.9 GATA3 TCF7L2 ZNF384 SP7 HDGF FOSL2 GLIS2 PKNOX1 ZIC2 GATAD2B MSI2 ENSG00000279555 lnc-AKAP1-5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around lnc-AKAP1-5 on UCSC Golden Path with GeneCards custom track

Genomic Locations for lnc-AKAP1-5 Gene

Genomic Locations for lnc-AKAP1-5 Gene
chr17:57,319,881-57,327,997
(GRCh38/hg38)
Size:
8,117 bases
Orientation:
Plus strand

Genomic View for lnc-AKAP1-5 Gene

Genes around lnc-AKAP1-5 on UCSC Golden Path with GeneCards custom track

lnc-AKAP1-5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for lnc-AKAP1-5 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for lnc-AKAP1-5 Gene

Proteins for lnc-AKAP1-5 Gene

Post-translational modifications for lnc-AKAP1-5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for lnc-AKAP1-5 Gene

Domains & Families for lnc-AKAP1-5 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for lnc-AKAP1-5 Gene

Function for lnc-AKAP1-5 Gene

Phenotypes From GWAS Catalog for lnc-AKAP1-5 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for lnc-AKAP1-5 Gene

Localization for lnc-AKAP1-5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for lnc-AKAP1-5 Gene

Pathways & Interactions for lnc-AKAP1-5 Gene

PathCards logo

SuperPathways for lnc-AKAP1-5 Gene

No Data Available

Gene Ontology (GO) - Biological Process for lnc-AKAP1-5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for lnc-AKAP1-5 Gene

Drugs & Compounds for lnc-AKAP1-5 Gene

No Compound Related Data Available

Transcripts for lnc-AKAP1-5 Gene

mRNA/cDNA for lnc-AKAP1-5 Gene

(1) RNACentral transcripts :
(1) LncBook transcripts :
(1) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for lnc-AKAP1-5 Gene

No ASD Table

Relevant External Links for lnc-AKAP1-5 Gene

GeneLoc Exon Structure for
lnc-AKAP1-5

Expression for lnc-AKAP1-5 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for lnc-AKAP1-5 Gene

Orthologs for lnc-AKAP1-5 Gene

No data available for Orthologs and Evolution for lnc-AKAP1-5 Gene

Paralogs for lnc-AKAP1-5 Gene

No data available for Paralogs for lnc-AKAP1-5 Gene

Variants for lnc-AKAP1-5 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for lnc-AKAP1-5 Gene

Disorders for lnc-AKAP1-5 Gene

No disorders were found for lnc-AKAP1-5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for lnc-AKAP1-5 Gene

Publications for lnc-AKAP1-5 Gene

No publications were found for lnc-AKAP1-5 Gene.

No data available for External Links for lnc-AKAP1-5 Gene

Products for lnc-AKAP1-5 Gene

Sources for lnc-AKAP1-5 Gene