Aliases for lnc-AIRE-5 Gene

Subcategory (RNA class) for lnc-AIRE-5 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for lnc-AIRE-5 Gene

  • NONHSAG033021 92
  • Lnc-AIRE-5 168

No data available for External Ids for lnc-AIRE-5 Gene

Summaries for lnc-AIRE-5 Gene

GeneCards Summary for lnc-AIRE-5 Gene

lnc-AIRE-5 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for lnc-AIRE-5 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for lnc-AIRE-5 Gene

Genomics for lnc-AIRE-5 Gene

GeneHancer (GH) Regulatory Elements for lnc-AIRE-5 Gene

Promoters and enhancers for lnc-AIRE-5 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J044263 Enhancer 1.1 FANTOM5 Ensembl ENCODE CraniofacialAtlas 500.7 +0.3 338 1.4 USF1 ZIC2 ZFHX2 NR2F1 ELF1 PRDM10 GLIS1 HNRNPK EGR2 PATZ1 lnc-AIRE-5 ICOSLG AIRE TRAPPC10 ENSG00000184441 DNMT3L KRTAP12-2 KRTAP10-6 KRTAP12-4 KRTAP12-1
GH21J044261 Promoter 0.6 EPDnew 500.7 -1.3 -1276 0.1 KLF8 EGR1 VEZF1 KLF1 EGR2 lnc-AIRE-5 DNMT3L DNMT3L-AS1
GH21J044247 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -14.0 -13975 4 EP300 FOXK2 ZNF217 POLR2G NCOR1 KDM6A TCF7 AFF1 CTCF REST UBE2G2 RRP1B PWP2 TRAPPC10 ENSG00000184441 ICOSLG DNMT3L-AS1 lnc-AIRE-5 DNMT3L
GH21J044254 Enhancer 0.6 Ensembl 0.4 -8.2 -8163 1.6 ZIC2 REST CTCF CREB3L1 ZFHX2 FOXA1 KLF17 KLF1 CREM L3MBTL2 ICOSLG DNMT3L-AS1 lnc-AIRE-5 DNMT3L
GH21J044252 Enhancer 0.6 Ensembl ENCODE 0.4 -11.2 -11162 0.8 JUND CUX1 KAT2B HNRNPL ICOSLG DNMT3L-AS1 lnc-AIRE-5 DNMT3L
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around lnc-AIRE-5 on UCSC Golden Path with GeneCards custom track

Genomic Locations for lnc-AIRE-5 Gene

Genomic Locations for lnc-AIRE-5 Gene
chr21:44,263,163-44,263,431
(GRCh38/hg38)
Size:
269 bases
Orientation:
Plus strand

Genomic View for lnc-AIRE-5 Gene

Genes around lnc-AIRE-5 on UCSC Golden Path with GeneCards custom track

lnc-AIRE-5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for lnc-AIRE-5 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for lnc-AIRE-5 Gene

Proteins for lnc-AIRE-5 Gene

Post-translational modifications for lnc-AIRE-5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for lnc-AIRE-5 Gene

Domains & Families for lnc-AIRE-5 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for lnc-AIRE-5 Gene

Function for lnc-AIRE-5 Gene

miRNA for lnc-AIRE-5 Gene

miRTarBase miRNAs that target lnc-AIRE-5

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for lnc-AIRE-5 Gene

Localization for lnc-AIRE-5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for lnc-AIRE-5 Gene

Pathways & Interactions for lnc-AIRE-5 Gene

PathCards logo

SuperPathways for lnc-AIRE-5 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for lnc-AIRE-5 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for lnc-AIRE-5 Gene

Drugs & Compounds for lnc-AIRE-5 Gene

No Compound Related Data Available

Transcripts for lnc-AIRE-5 Gene

mRNA/cDNA for lnc-AIRE-5 Gene

1 RNACentral transcripts :
1 NONCODE transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for lnc-AIRE-5 Gene

No ASD Table

Relevant External Links for lnc-AIRE-5 Gene

GeneLoc Exon Structure for
lnc-AIRE-5

Expression for lnc-AIRE-5 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for lnc-AIRE-5 Gene

Orthologs for lnc-AIRE-5 Gene

No data available for Orthologs and Evolution for lnc-AIRE-5 Gene

Paralogs for lnc-AIRE-5 Gene

No data available for Paralogs for lnc-AIRE-5 Gene

Variants for lnc-AIRE-5 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for lnc-AIRE-5 Gene

Disorders for lnc-AIRE-5 Gene

No disorders were found for lnc-AIRE-5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for lnc-AIRE-5 Gene

Publications for lnc-AIRE-5 Gene

No publications were found for lnc-AIRE-5 Gene.

No data available for Mastermind for lnc-AIRE-5 Gene

Products for lnc-AIRE-5 Gene

Sources for lnc-AIRE-5 Gene