Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ZSWIM8-AS1 Gene

Subcategory (RNA class) for ZSWIM8-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ZSWIM8-AS1 Gene

  • ZSWIM8 Antisense RNA 1 2 3 5

External Ids for ZSWIM8-AS1 Gene

Previous GeneCards Identifiers for ZSWIM8-AS1 Gene

  • GC10M075558

Summaries for ZSWIM8-AS1 Gene

GeneCards Summary for ZSWIM8-AS1 Gene

ZSWIM8-AS1 (ZSWIM8 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ZSWIM8-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZSWIM8-AS1 Gene

Genomics for ZSWIM8-AS1 Gene

GeneHancer (GH) Regulatory Elements for ZSWIM8-AS1 Gene

Promoters and enhancers for ZSWIM8-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I073243 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 30.6 +555.1 555146 5.5 HDGF PKNOX1 SMAD1 ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 DNAJC9 DNAJC9-AS1 SEC24C NDST2 ZSWIM8 NUDT13 DNAJB12 GLUD1P3 ZSWIM8-AS1 ENSG00000272140
GH10I073996 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 28.5 -197.9 -197869 4.7 HDGF PKNOX1 SMAD1 FOXA2 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B VCL ECD AP3M1 SEC24C ZSWIM8 GLUD1P3 ZSWIM8-AS1 NDST2 DUSP8P5 RPL17P50
GH10I073250 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 28 +549.1 549065 3.5 HDGF PKNOX1 SMAD1 FOXA2 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 ENSG00000227540 MRPS16 DNAJB12 NDST2 ZSWIM8 SEC24C AP3M1 ECD NUDT13 ENSG00000272140
GH10I073109 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 26.2 +690.3 690342 2.4 HDGF PKNOX1 ARNT ZFP64 ARID4B SIN3A ZNF2 IRF4 YY1 SLC30A9 NUDT13 ZSWIM8 NDST2 DNAJB12 SEC24C ZSWIM8-AS1 CFAP70 DNAJC9 ECD ENSG00000272140
GH10I074174 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 14 -375.6 -375639 5.5 CLOCK FEZF1 DMAP1 YY1 ZNF213 E2F8 ZNF143 ZNF263 SP3 NFYC ADK AP3M1 SEC24C GLUD1P3 ENSG00000272140 DUSP8P5 BMS1P4 NDST2 ZSWIM8 ZSWIM8-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ZSWIM8-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ZSWIM8-AS1 Gene

Genomic Locations for ZSWIM8-AS1 Gene
chr10:73,796,514-73,801,399
(GRCh38/hg38)
Size:
4,886 bases
Orientation:
Minus strand
chr10:75,556,272-75,561,157
(GRCh37/hg19)

Genomic View for ZSWIM8-AS1 Gene

Genes around ZSWIM8-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZSWIM8-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZSWIM8-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZSWIM8-AS1 Gene

Proteins for ZSWIM8-AS1 Gene

Post-translational modifications for ZSWIM8-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZSWIM8-AS1 Gene

Domains & Families for ZSWIM8-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZSWIM8-AS1 Gene

Function for ZSWIM8-AS1 Gene

Phenotypes From GWAS Catalog for ZSWIM8-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZSWIM8-AS1 Gene

Localization for ZSWIM8-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZSWIM8-AS1 Gene

Pathways & Interactions for ZSWIM8-AS1 Gene

SuperPathways for ZSWIM8-AS1 Gene

No Data Available

Interacting Proteins for ZSWIM8-AS1 Gene

Gene Ontology (GO) - Biological Process for ZSWIM8-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZSWIM8-AS1 Gene

Drugs & Compounds for ZSWIM8-AS1 Gene

No Compound Related Data Available

Transcripts for ZSWIM8-AS1 Gene

mRNA/cDNA for ZSWIM8-AS1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZSWIM8-AS1 Gene

ZSWIM8 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZSWIM8-AS1 Gene

No ASD Table

Relevant External Links for ZSWIM8-AS1 Gene

GeneLoc Exon Structure for
ZSWIM8-AS1
ECgene alternative splicing isoforms for
ZSWIM8-AS1

Expression for ZSWIM8-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZSWIM8-AS1 Gene

Protein differential expression in normal tissues from HIPED for ZSWIM8-AS1 Gene

This gene is overexpressed in Bone marrow mesenchymal stem cell (49.2), Adipocyte (10.8), and Spleen (9.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MaxQB and MOPED for ZSWIM8-AS1 Gene



Protein tissue co-expression partners for ZSWIM8-AS1 Gene

SOURCE GeneReport for Unigene cluster for ZSWIM8-AS1 Gene:

Hs.631828
genes like me logo Genes that share expression patterns with ZSWIM8-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZSWIM8-AS1 Gene

Orthologs for ZSWIM8-AS1 Gene

Evolution for ZSWIM8-AS1 Gene

ENSEMBL:
Gene Tree for ZSWIM8-AS1 (if available)
TreeFam:
Gene Tree for ZSWIM8-AS1 (if available)

No data available for Orthologs for ZSWIM8-AS1 Gene

Paralogs for ZSWIM8-AS1 Gene

No data available for Paralogs for ZSWIM8-AS1 Gene

Variants for ZSWIM8-AS1 Gene

Sequence variations from dbSNP and Humsavar for ZSWIM8-AS1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000017397 -- 73,798,973(-) C/A intron_variant
rs1000108319 -- 73,799,875(-) T/C intron_variant
rs1000176467 -- 73,798,184(-) GG/G intron_variant
rs1001689150 -- 73,797,237(-) G/A non_coding_transcript_variant
rs1001997097 -- 73,802,838(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ZSWIM8-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv831912 CNV gain 17160897
nsv825468 CNV gain 20364138
nsv551517 CNV loss 21841781
nsv551516 CNV loss 21841781
nsv1035634 CNV gain 25217958
dgv46n21 CNV loss 19592680

Additional Variant Information for ZSWIM8-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZSWIM8-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ZSWIM8-AS1 Gene

Disorders for ZSWIM8-AS1 Gene

Additional Disease Information for ZSWIM8-AS1

No disorders were found for ZSWIM8-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZSWIM8-AS1 Gene

Publications for ZSWIM8-AS1 Gene

No publications were found for ZSWIM8-AS1 Gene.

Products for ZSWIM8-AS1 Gene

Sources for ZSWIM8-AS1 Gene

Content
Loading form....