Aliases for ZSCAN29 Gene

Aliases for ZSCAN29 Gene

  • Zinc Finger And SCAN Domain Containing 29 2 3 5
  • Zinc Finger Protein 690 2 3 4
  • Zinc Finger And SCAN Domain-Containing Protein 29 3 4
  • ZNF690 3 4
  • Zfp690 2 3
  • KOX31-Like Zinc Finger Protein 3
  • EC 51
  • EC 51
  • FLJ35867 2
  • ZSCAN29 5

External Ids for ZSCAN29 Gene

Previous HGNC Symbols for ZSCAN29 Gene

  • ZNF690

Previous GeneCards Identifiers for ZSCAN29 Gene

  • GC15M041443
  • GC15M043650
  • GC15M020498

Summaries for ZSCAN29 Gene

GeneCards Summary for ZSCAN29 Gene

ZSCAN29 (Zinc Finger And SCAN Domain Containing 29) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include DNA-binding transcription factor activity and DNA-binding transcription factor activity, RNA polymerase II-specific. An important paralog of this gene is ZKSCAN2.

UniProtKB/Swiss-Prot Summary for ZSCAN29 Gene

Additional gene information for ZSCAN29 Gene

No data available for Entrez Gene Summary , CIViC Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ZSCAN29 Gene

Genomics for ZSCAN29 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ZSCAN29 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ZSCAN29 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for ZSCAN29

Top Transcription factor binding sites by QIAGEN in the ZSCAN29 gene promoter:
  • C/EBPalpha
  • CHOP-10
  • GR
  • GR-alpha
  • GR-beta
  • POU2F1
  • POU2F1a
  • PPAR-gamma1
  • PPAR-gamma2
  • RSRFC4

Genomic Locations for ZSCAN29 Gene

Genomic Locations for ZSCAN29 Gene
12,872 bases
Minus strand
12,854 bases
Minus strand

Genomic View for ZSCAN29 Gene

Genes around ZSCAN29 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZSCAN29 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZSCAN29 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZSCAN29 Gene

Proteins for ZSCAN29 Gene

  • Protein details for ZSCAN29 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Zinc finger and SCAN domain-containing protein 29
    Protein Accession:
    Secondary Accessions:
    • B3KVB9
    • Q32M75
    • Q32M76
    • Q8NA40

    Protein attributes for ZSCAN29 Gene

    852 amino acids
    Molecular mass:
    96719 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for ZSCAN29 Gene


neXtProt entry for ZSCAN29 Gene

Selected DME Specific Peptides for ZSCAN29 Gene


Post-translational modifications for ZSCAN29 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Domains & Families for ZSCAN29 Gene

Gene Families for ZSCAN29 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Transcription factors

Protein Domains for ZSCAN29 Gene

  • C2H2-type zinc finger signature
  • Transcriptional regulator SCAN

Suggested Antigen Peptide Sequences for ZSCAN29 Gene

GenScript: Design optimal peptide antigens:
  • ZSCAN29 protein (Q05BJ4_HUMAN)
  • ZSCAN29 protein (Q96AG1_HUMAN)
  • Zinc finger protein 690 (ZSC29_HUMAN)

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the krueppel C2H2-type zinc-finger protein family.
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
genes like me logo Genes that share domains with ZSCAN29: view

Function for ZSCAN29 Gene

Molecular function for ZSCAN29 Gene

UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation.

Enzyme Numbers (IUBMB) for ZSCAN29 Gene

Phenotypes From GWAS Catalog for ZSCAN29 Gene

Gene Ontology (GO) - Molecular Function for ZSCAN29 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding IEA --
GO:0003677 DNA binding IEA --
GO:0003700 DNA-binding transcription factor activity IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZSCAN29: view
genes like me logo Genes that share phenotypes with ZSCAN29: view

Animal Model Products

CRISPR Products

miRNA for ZSCAN29 Gene

miRTarBase miRNAs that target ZSCAN29

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ZSCAN29

No data available for Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ZSCAN29 Gene

Localization for ZSCAN29 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZSCAN29 Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ZSCAN29 gene
Compartment Confidence
nucleus 4
cytosol 2

Subcellular locations from the

Human Protein Atlas (HPA)
  • Actin filaments (2)
  • Nucleoplasm (2)
  • Plasma membrane (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for ZSCAN29 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZSCAN29: view

Pathways & Interactions for ZSCAN29 Gene

PathCards logo

SuperPathways for ZSCAN29 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ZSCAN29 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZSCAN29: view

No data available for Pathways by source and SIGNOR curated interactions for ZSCAN29 Gene

Drugs & Compounds for ZSCAN29 Gene

No Compound Related Data Available

Transcripts for ZSCAN29 Gene

mRNA/cDNA for ZSCAN29 Gene

15 NCBI additional mRNA sequence :
8 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ZSCAN29

Alternative Splicing Database (ASD) splice patterns (SP) for ZSCAN29 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3a · 3b · 3c ^ 4a · 4b · 4c · 4d ^ 5a · 5b
SP1: - -
SP2: - - -
SP4: -
SP5: - - - - - - -

Relevant External Links for ZSCAN29 Gene

GeneLoc Exon Structure for

Expression for ZSCAN29 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ZSCAN29 Gene

Protein differential expression in normal tissues from HIPED for ZSCAN29 Gene

This gene is overexpressed in Brain (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for ZSCAN29 Gene

Protein tissue co-expression partners for ZSCAN29 Gene

- Elite partner

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ZSCAN29

SOURCE GeneReport for Unigene cluster for ZSCAN29 Gene:


Evidence on tissue expression from TISSUES for ZSCAN29 Gene

  • Liver(4.4)
  • Blood(4.2)
genes like me logo Genes that share expression patterns with ZSCAN29: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZSCAN29 Gene

Orthologs for ZSCAN29 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ZSCAN29 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia ZSCAN29 30 31
  • 99.53 (n)
(Canis familiaris)
Mammalia ZSCAN29 30 31
  • 90.12 (n)
(Bos Taurus)
Mammalia ZSCAN29 30 31
  • 88.9 (n)
(Mus musculus)
Mammalia Zscan29 30 17 31
  • 86.02 (n)
(Rattus norvegicus)
Mammalia Zscan29 30
  • 84.74 (n)
(Monodelphis domestica)
Mammalia ZSCAN29 31
  • 71 (a)
(Ornithorhynchus anatinus)
Mammalia ZSCAN29 31
  • 54 (a)
(Anolis carolinensis)
Reptilia -- 31
  • 49 (a)
Species where no ortholog for ZSCAN29 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for ZSCAN29 Gene

Gene Tree for ZSCAN29 (if available)
Gene Tree for ZSCAN29 (if available)
Evolutionary constrained regions (ECRs) for ZSCAN29: view image

Paralogs for ZSCAN29 Gene

(466) SIMAP similar genes for ZSCAN29 Gene using alignment to 7 proteins:

  • C9K0J8_HUMAN
  • Q05BJ4_HUMAN
  • Q96AG1_HUMAN Pseudogenes for ZSCAN29 Gene

genes like me logo Genes that share paralogs with ZSCAN29: view

Variants for ZSCAN29 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for ZSCAN29 Gene

SNP ID Clinical significance and condition Chr 15 pos Variation AA Info Type
rs3809482 - p.Arg104Gly
rs3917221 - p.Gly199Ser

Additional dbSNP identifiers (rs#s) for ZSCAN29 Gene

Structural Variations from Database of Genomic Variants (DGV) for ZSCAN29 Gene

Variant ID Type Subtype PubMed ID
esv1003756 CNV deletion 20482838
esv2020159 CNV deletion 18987734
esv2430486 CNV deletion 19546169
esv2618501 CNV deletion 19546169
esv2749625 CNV deletion 23290073
esv3552373 CNV deletion 23714750
esv8406 CNV loss 19470904
nsv1071208 CNV deletion 25765185
nsv1138362 CNV deletion 24896259
nsv1151412 CNV deletion 26484159
nsv1512 CNV deletion 18451855
nsv1513 CNV insertion 18451855
nsv957953 CNV deletion 24416366

Variation tolerance for ZSCAN29 Gene

Residual Variation Intolerance Score: 89.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 7.96; 84.02% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for ZSCAN29 Gene

Human Gene Mutation Database (HGMD)
SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZSCAN29 Gene

Disorders for ZSCAN29 Gene

No disorders were found for ZSCAN29 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZSCAN29 Gene

Publications for ZSCAN29 Gene

  1. Congenital dyserythropoietic anemia type I is caused by mutations in codanin-1. (PMID: 12434312) Dgany O … Tamary H (American journal of human genetics 2002) 2 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4
  4. A reference map of the human binary protein interactome. (PMID: 32296183) Luck K … Calderwood MA (Nature 2020) 3
  5. H4K20me0 recognition by BRCA1-BARD1 directs homologous recombination to sister chromatids. (PMID: 30804502) Nakamura K … Groth A (Nature cell biology 2019) 3

Products for ZSCAN29 Gene

  • Signalway Proteins for ZSCAN29

Sources for ZSCAN29 Gene