Aliases for ZSCAN16-AS1 Gene

Subcategory (RNA class) for ZSCAN16-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for ZSCAN16-AS1 Gene

  • ZSCAN16 Antisense RNA 1 2 3 5
  • ZSCAN16-AS1 2 170
  • NONHSAG043301 94
  • HSALNG0048931 169
  • NONHSAG043303 94

External Ids for ZSCAN16-AS1 Gene

Previous GeneCards Identifiers for ZSCAN16-AS1 Gene

  • GC06M028059
  • GC06M028121

Summaries for ZSCAN16-AS1 Gene

GeneCards Summary for ZSCAN16-AS1 Gene

ZSCAN16-AS1 (ZSCAN16 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ZSCAN16-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ZSCAN16-AS1 Gene

Genomics for ZSCAN16-AS1 Gene

GeneHancer (GH) Regulatory Elements for ZSCAN16-AS1 Gene

Promoters and enhancers for ZSCAN16-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ZSCAN16-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ZSCAN16-AS1 Gene

Genomic Locations for ZSCAN16-AS1 Gene
chr6:28,015,122-28,137,670
(GRCh38/hg38)
Size:
122,549 bases
Orientation:
Minus strand
chr6:28,058,336-28,105,071
(GRCh37/hg19)
Size:
46,736 bases
Orientation:
Minus strand

Genomic View for ZSCAN16-AS1 Gene

Genes around ZSCAN16-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZSCAN16-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZSCAN16-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZSCAN16-AS1 Gene

Proteins for ZSCAN16-AS1 Gene

Post-translational modifications for ZSCAN16-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZSCAN16-AS1 Gene

Domains & Families for ZSCAN16-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ZSCAN16-AS1 Gene

Function for ZSCAN16-AS1 Gene

Phenotypes From GWAS Catalog for ZSCAN16-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZSCAN16-AS1 Gene

Localization for ZSCAN16-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZSCAN16-AS1 Gene

Pathways & Interactions for ZSCAN16-AS1 Gene

PathCards logo

SuperPathways for ZSCAN16-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ZSCAN16-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZSCAN16-AS1 Gene

Drugs & Compounds for ZSCAN16-AS1 Gene

No Compound Related Data Available

Transcripts for ZSCAN16-AS1 Gene

mRNA/cDNA for ZSCAN16-AS1 Gene

(2) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(7) NONCODE transcripts :
(16) RNACentral transcripts :
(5) LncBook transcripts :
(15) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ZSCAN16-AS1 Gene

No ASD Table

Relevant External Links for ZSCAN16-AS1 Gene

GeneLoc Exon Structure for
ZSCAN16-AS1
ECgene alternative splicing isoforms for
ZSCAN16-AS1

Expression for ZSCAN16-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZSCAN16-AS1 Gene

genes like me logo Genes that share expression patterns with ZSCAN16-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZSCAN16-AS1 Gene

Orthologs for ZSCAN16-AS1 Gene

Evolution for ZSCAN16-AS1 Gene

ENSEMBL:
Gene Tree for ZSCAN16-AS1 (if available)
TreeFam:
Gene Tree for ZSCAN16-AS1 (if available)

No data available for Orthologs for ZSCAN16-AS1 Gene

Paralogs for ZSCAN16-AS1 Gene

No data available for Paralogs for ZSCAN16-AS1 Gene

Variants for ZSCAN16-AS1 Gene

Sequence variations from dbSNP and Humsavar for ZSCAN16-AS1 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000183590 -- 28,128,381(-) TTACATTAC/TTAC intron_variant
rs1000345333 -- 28,137,080(-) G/T non_coding_transcript_variant
rs1000361029 -- 28,128,516(-) G/C intron_variant
rs1000681677 -- 28,138,830(-) G/C upstream_transcript_variant
rs1000753793 -- 28,130,900(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ZSCAN16-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv472348 CNV novel sequence insertion 20440878
nsv480860 CNV novel sequence insertion 20440878

Additional Variant Information for ZSCAN16-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZSCAN16-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ZSCAN16-AS1 Gene

Disorders for ZSCAN16-AS1 Gene

Additional Disease Information for ZSCAN16-AS1

No disorders were found for ZSCAN16-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZSCAN16-AS1 Gene

Publications for ZSCAN16-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

Products for ZSCAN16-AS1 Gene

Sources for ZSCAN16-AS1 Gene