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Aliases for ZSCAN10 Gene

Aliases for ZSCAN10 Gene

  • Zinc Finger And SCAN Domain Containing 10 2 3 5
  • Zinc Finger Protein 206 2 3 4
  • ZNF206 3 4
  • Zinc Finger And SCAN Domain-Containing Protein 10 3

External Ids for ZSCAN10 Gene

Previous HGNC Symbols for ZSCAN10 Gene

  • ZNF206

Previous GeneCards Identifiers for ZSCAN10 Gene

  • GC16M003079
  • GC16M003138
  • GC16M003110

Summaries for ZSCAN10 Gene

GeneCards Summary for ZSCAN10 Gene

ZSCAN10 (Zinc Finger And SCAN Domain Containing 10) is a Protein Coding gene. Among its related pathways are Developmental Biology and Transcriptional regulation of pluripotent stem cells. Gene Ontology (GO) annotations related to this gene include DNA binding transcription factor activity and sequence-specific DNA binding. An important paralog of this gene is MZF1.

UniProtKB/Swiss-Prot for ZSCAN10 Gene

  • Embryonic stem (ES) cell-specific transcription factor required to maintain ES cell pluripotency. Can both activate and /or repress expression of target genes, depending on the context. Specifically binds the 5-[GA]CGCNNGCG[CT]-3 DNA consensus sequence. Regulates expression of POU5F1/OCT4, ZSCAN4 and ALYREF/THOC4 (By similarity).

Additional gene information for ZSCAN10 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZSCAN10 Gene

Genomics for ZSCAN10 Gene

GeneHancer (GH) Regulatory Elements for ZSCAN10 Gene

Promoters and enhancers for ZSCAN10 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I003097 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 555 -0.8 -783 6.2 ARID4B SIN3A IRF4 YY1 ETS1 ARID2 ZNF143 RUNX3 SP3 RXRA ZSCAN10 ZNF205 ZNF213-AS1 CLDN6 TNFRSF12A ZNF205-AS1 ZNF213 ZNF263 OR1F1 ZNF597
GH16I003063 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 7.3 +33.3 33260 5.8 HDGF PKNOX1 MLX ARID4B DMAP1 IRF4 ZNF48 ETS1 YY1 GLIS2 IL32 MMP25 LOC105371058 E4F1 ZNF75A BICDL2 ZSCAN10 LOC100128770 LOC107984895 ENSG00000260447
GH16I003190 Enhancer 1.2 FANTOM5 ENCODE 5.1 -92.0 -91992 0.8 ATF1 ARID4B SIN3A ZNF2 GTF3C2 ZNF213 FOS ATF7 ZNF214 ZHX2 GC16P003503 GC16P003510 OR1F1 TRK-CTT4-1 TRP-AGG2-8 TRP-AGG1-1 MTCO1P28 ZNF205 ZNF75A CLUAP1
GH16I003233 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 2.3 -135.7 -135717 2.2 PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 POLR2B ZNF200 CREBBP ZNF263 LOC105371055 ENSG00000261938 ZNF597 SRRM2 AMDHD2 ZNF205 ERVK13-1
GH16I003095 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.8 +3.2 3172 1.3 BCOR CTCF ZBTB6 ZMYM3 RAD21 RELA ZKSCAN1 POLR2A VEZF1 ZNF143 THOC6 ZNF213-AS1 SRRM2 CREBBP RNU1-125P IL32 MMP25 BICDL2 LOC100128770 HCFC1R1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ZSCAN10 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the ZSCAN10 gene promoter:

Genomic Locations for ZSCAN10 Gene

Genomic Locations for ZSCAN10 Gene
chr16:3,088,890-3,099,317
(GRCh38/hg38)
Size:
10,428 bases
Orientation:
Minus strand
chr16:3,138,891-3,149,318
(GRCh37/hg19)

Genomic View for ZSCAN10 Gene

Genes around ZSCAN10 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZSCAN10 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZSCAN10 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZSCAN10 Gene

Proteins for ZSCAN10 Gene

  • Protein details for ZSCAN10 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96SZ4-ZSC10_HUMAN
    Recommended name:
    Zinc finger and SCAN domain-containing protein 10
    Protein Accession:
    Q96SZ4
    Secondary Accessions:
    • B3KQD3
    • H0YFS6
    • Q1WWM2

    Protein attributes for ZSCAN10 Gene

    Size:
    725 amino acids
    Molecular mass:
    80387 Da
    Quaternary structure:
    • Interacts with POU5F1/OCT4 and SOX2.
    SequenceCaution:
    • Sequence=AAI14453.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

    Alternative splice isoforms for ZSCAN10 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZSCAN10 Gene

Post-translational modifications for ZSCAN10 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ZSCAN10 Gene

Domains & Families for ZSCAN10 Gene

Gene Families for ZSCAN10 Gene

HGNC:
Human Protein Atlas (HPA):
  • Plasma proteins
  • Predicted intracellular proteins
  • Transcription factors

Suggested Antigen Peptide Sequences for ZSCAN10 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ZSCAN10: view

No data available for UniProtKB/Swiss-Prot for ZSCAN10 Gene

Function for ZSCAN10 Gene

Molecular function for ZSCAN10 Gene

UniProtKB/Swiss-Prot Function:
Embryonic stem (ES) cell-specific transcription factor required to maintain ES cell pluripotency. Can both activate and /or repress expression of target genes, depending on the context. Specifically binds the 5-[GA]CGCNNGCG[CT]-3 DNA consensus sequence. Regulates expression of POU5F1/OCT4, ZSCAN4 and ALYREF/THOC4 (By similarity).

Gene Ontology (GO) - Molecular Function for ZSCAN10 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0003700 DNA binding transcription factor activity IBA,ISS --
GO:0043565 sequence-specific DNA binding ISS --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZSCAN10: view
genes like me logo Genes that share phenotypes with ZSCAN10: view

Animal Models for ZSCAN10 Gene

MGI Knock Outs for ZSCAN10:

Animal Model Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , miRNA , Transcription Factor Targets and HOMER Transcription for ZSCAN10 Gene

Localization for ZSCAN10 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZSCAN10 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ZSCAN10 gene
Compartment Confidence
nucleus 5
cytosol 2

Gene Ontology (GO) - Cellular Components for ZSCAN10 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus ISS --
GO:0005654 nucleoplasm TAS --
genes like me logo Genes that share ontologies with ZSCAN10: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for ZSCAN10 Gene

Pathways & Interactions for ZSCAN10 Gene

genes like me logo Genes that share pathways with ZSCAN10: view

Pathways by source for ZSCAN10 Gene

Gene Ontology (GO) - Biological Process for ZSCAN10 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IBA --
GO:0035019 somatic stem cell population maintenance TAS --
GO:0045892 negative regulation of transcription, DNA-templated ISS --
genes like me logo Genes that share ontologies with ZSCAN10: view

No data available for SIGNOR curated interactions for ZSCAN10 Gene

Drugs & Compounds for ZSCAN10 Gene

No Compound Related Data Available

Transcripts for ZSCAN10 Gene

Unigene Clusters for ZSCAN10 Gene

Zinc finger and SCAN domain containing 10:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZSCAN10 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4a · 4b ^ 5a · 5b
SP1:
SP2: - -
SP3: -

Relevant External Links for ZSCAN10 Gene

GeneLoc Exon Structure for
ZSCAN10
ECgene alternative splicing isoforms for
ZSCAN10

Expression for ZSCAN10 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZSCAN10 Gene

mRNA differential expression in normal tissues according to GTEx for ZSCAN10 Gene

This gene is overexpressed in Brain - Cerebellum (x8.8), Brain - Cerebellar Hemisphere (x6.8), Muscle - Skeletal (x5.9), and Testis (x4.6).

Protein differential expression in normal tissues from HIPED for ZSCAN10 Gene

This gene is overexpressed in Liver, secretome (63.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for ZSCAN10 Gene



Protein tissue co-expression partners for ZSCAN10 Gene

NURSA nuclear receptor signaling pathways regulating expression of ZSCAN10 Gene:

ZSCAN10

SOURCE GeneReport for Unigene cluster for ZSCAN10 Gene:

Hs.334515
genes like me logo Genes that share expression patterns with ZSCAN10: view

No data available for mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZSCAN10 Gene

Orthologs for ZSCAN10 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ZSCAN10 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZSCAN10 33 34
  • 99.03 (n)
dog
(Canis familiaris)
Mammalia ZSCAN10 33 34
  • 84.77 (n)
cow
(Bos Taurus)
Mammalia ZSCAN10 33 34
  • 83.47 (n)
rat
(Rattus norvegicus)
Mammalia Zscan10 33
  • 76.04 (n)
mouse
(Mus musculus)
Mammalia Zscan10 33 16 34
  • 75.37 (n)
oppossum
(Monodelphis domestica)
Mammalia ZSCAN10 34
  • 52 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 44 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii -- 33
Species where no ortholog for ZSCAN10 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ZSCAN10 Gene

ENSEMBL:
Gene Tree for ZSCAN10 (if available)
TreeFam:
Gene Tree for ZSCAN10 (if available)

Paralogs for ZSCAN10 Gene

Paralogs for ZSCAN10 Gene

(485) SIMAP similar genes for ZSCAN10 Gene using alignment to 6 proteins:

genes like me logo Genes that share paralogs with ZSCAN10: view

Variants for ZSCAN10 Gene

Sequence variations from dbSNP and Humsavar for ZSCAN10 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000119185 -- 3,095,802(-) T/C genic_upstream_transcript_variant, intron_variant
rs1000198281 -- 3,098,650(-) A/C genic_upstream_transcript_variant, intron_variant
rs1000211429 -- 3,100,650(-) T/C upstream_transcript_variant
rs1000355944 -- 3,095,547(-) G/C genic_upstream_transcript_variant, intron_variant
rs1000378431 -- 3,093,667(-) T/G genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ZSCAN10 Gene

Variant ID Type Subtype PubMed ID
esv3637652 CNV loss 21293372
nsv509589 CNV insertion 20534489
nsv571248 CNV loss 21841781
nsv833125 CNV loss 17160897

Variation tolerance for ZSCAN10 Gene

Residual Variation Intolerance Score: 15% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.47; 43.42% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for ZSCAN10 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZSCAN10

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZSCAN10 Gene

Disorders for ZSCAN10 Gene

Additional Disease Information for ZSCAN10

No disorders were found for ZSCAN10 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZSCAN10 Gene

Publications for ZSCAN10 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  2. A transcriptional Map of the FMF region. (PMID: 9653642) Bernot A … Weissenbach J (Genomics 1998) 2 3 58
  3. ZSCAN10 expression corrects the genomic instability of iPSCs from aged donors. (PMID: 28846095) Skamagki M … Kim K (Nature cell biology 2017) 3 58
  4. Identification of aberrant methylation regions in neuroblastoma by screening of tissue-specific differentially methylated regions. (PMID: 22911660) Sugito K … Nagase H (Pediatric blood & cancer 2013) 3 58
  5. DNA hypomethylation at the ZNF206-exon 5 CpG island associated with neuronal differentiation in mice and development of neuroblastoma in humans. (PMID: 22011711) Kawashima H … Nagase H (International journal of oncology 2012) 3 58

Products for ZSCAN10 Gene

Sources for ZSCAN10 Gene

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