Aliases for ZNRF3-IT1 Gene

Data sources for ZNRF3-IT1 Gene:

Subcategory (RNA class) for ZNRF3-IT1 Gene

lncRNA

Aliases for ZNRF3-IT1 Gene

External Ids for ZNRF3-IT1 Gene

Previous GeneCards Identifiers for ZNRF3-IT1 Gene

  • GC00U933739
  • GC22P029389

Summaries for ZNRF3-IT1 Gene

GeneCards Summary for ZNRF3-IT1 Gene

ZNRF3-IT1 (ZNRF3 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ZNRF3-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ZNRF3-IT1 Gene

Genomics for ZNRF3-IT1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ZNRF3-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J028992 Enhancer 0.5 dbSUPER 250.7 +0.3 339 1.6 FEZF1 RBM22 IKZF1 ZNF121 PRDM1 ZNRF3-IT1 piR-48759-196 KREMEN1 ZNRF3
GH22J028982 Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -8.1 -8067 6 CEBPA FOXA1 ZIC2 KDM6A THAP11 FOXA2 ZNF511 MAFF SMAD4 SAP130 ZNRF3 C22orf31 ZNRF3-AS1 CCDC117 ZNRF3-IT1 piR-57133-388 KREMEN1
GH22J028988 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.7 -3.6 -3619 2.6 ZNF341 RBM22 TAF1 IKZF1 PKNOX1 EGR2 MTA2 ARNT ZFHX2 POLR2A C22orf31 ZNRF3-IT1 piR-57133-388 KREMEN1 ZNRF3
GH22J028975 Enhancer 1.2 ENCODE CraniofacialAtlas dbSUPER 0.4 -14.6 -14648 4.2 CEBPA IKZF1 ZFP64 CTCF KDM6A THAP11 FOXA2 SMAD4 SAP130 TAL1 ZNRF3 C22orf31 HSCB TTC28 ZNRF3-IT1 piR-57133-388 KREMEN1
GH22J029003 Enhancer 1.1 ENCODE CraniofacialAtlas dbSUPER 0.4 +12.0 11973 2.3 MXD4 KDM6A SIN3A SMAD4 SAP130 ETV4 KMT2B GABPB1 RARA TEAD3 piR-32214-442 C22orf31 ZNRF3-AS1 ZNRF3-IT1 piR-48759-196 KREMEN1 ZNRF3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ZNRF3-IT1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ZNRF3-IT1 Gene

Latest Assembly
chr22:28,992,720-29,018,621
(GRCh38/hg38)
Size:
25,902 bases
Orientation:
Plus strand

Previous Assembly
chr22:29,388,709-29,414,608
(GRCh37/hg19 by Ensembl)
Size:
25,900 bases
Orientation:
Plus strand

Genomic View for ZNRF3-IT1 Gene

Genes around ZNRF3-IT1 on UCSC Golden Path with GeneCards custom track
ZNRF3-IT1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ZNRF3-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNRF3-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ZNRF3-IT1 Gene

Proteins for ZNRF3-IT1 Gene

Post-translational modifications for ZNRF3-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZNRF3-IT1 Gene

Domains & Families for ZNRF3-IT1 Gene

Gene Families for ZNRF3-IT1 Gene

genes like me logo Genes that share domains with ZNRF3-IT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ZNRF3-IT1 Gene

Function for ZNRF3-IT1 Gene

Phenotypes From GWAS Catalog for ZNRF3-IT1 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNRF3-IT1 Gene

Localization for ZNRF3-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZNRF3-IT1 Gene

Pathways & Interactions for ZNRF3-IT1 Gene

PathCards logo

SuperPathways for ZNRF3-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ZNRF3-IT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ZNRF3-IT1 Gene

Drugs & Compounds for ZNRF3-IT1 Gene

No Compound Related Data Available

Transcripts for ZNRF3-IT1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ZNRF3-IT1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001D20A3_9606 lncRNA 676 4

Ensembl: ENST00000412798 (view in UCSC) ,

LncBook: HSALNT0276714,

LNCipedia: ZNRF3-IT1:1,

NONCODE: NONHSAT084664.2,

URS00009B404F_9606 lncRNA 674 2

LncBook: HSALNT0276715,

NONCODE: NONHSAT192226.1,

URS0001BE0BA8_9606 lncRNA 674 1

LncBook: HSALNT0276715,

URS0001BEC4D7_9606 lncRNA 674 1

LncBook: HSALNT0276714,

ZNRF3-IT1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ZNRF3-IT1 Gene

No ASD Table

Relevant External Links for ZNRF3-IT1 Gene

GeneLoc Exon Structure for
ZNRF3-IT1

No data available for mRNA/cDNA for ZNRF3-IT1 Gene

Expression for ZNRF3-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ZNRF3-IT1 Gene

genes like me logo Genes that share expression patterns with ZNRF3-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNRF3-IT1 Gene

Orthologs for ZNRF3-IT1 Gene

Evolution for ZNRF3-IT1 Gene

ENSEMBL:
Gene Tree for ZNRF3-IT1 (if available)
TreeFam:
Gene Tree for ZNRF3-IT1 (if available)

No data available for Orthologs for ZNRF3-IT1 Gene

Paralogs for ZNRF3-IT1 Gene

No data available for Paralogs for ZNRF3-IT1 Gene

Variants for ZNRF3-IT1 Gene

Additional Variant Information for ZNRF3-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNRF3-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ZNRF3-IT1 Gene

Disorders for ZNRF3-IT1 Gene

No disorders were found for ZNRF3-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ZNRF3-IT1 Gene

Publications for ZNRF3-IT1 Gene

No publications were found for ZNRF3-IT1 Gene.

No data available for Mastermind for ZNRF3-IT1 Gene

Products for ZNRF3-IT1 Gene

Sources for ZNRF3-IT1 Gene