Aliases for ZNRF3-IT1 Gene

Subcategory (RNA class) for ZNRF3-IT1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ZNRF3-IT1 Gene

  • ZNRF3 Intronic Transcript 1 2 3 5
  • ZNRF3-IT1 2 5 165
  • ZNRF3 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • NONHSAG033624.2 91
  • HSALNG0134797 164

External Ids for ZNRF3-IT1 Gene

Previous GeneCards Identifiers for ZNRF3-IT1 Gene

  • GC00U933739
  • GC22P029389

Summaries for ZNRF3-IT1 Gene

GeneCards Summary for ZNRF3-IT1 Gene

ZNRF3-IT1 (ZNRF3 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ZNRF3-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ZNRF3-IT1 Gene

Genomics for ZNRF3-IT1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ZNRF3-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J028992 Enhancer 0.6 Ensembl dbSUPER 600.7 +0.1 80 0.4 PRDM1 RBM22 FEZF1 IKZF1 ZNRF3-IT1 piR-48759-196 KREMEN1 ZNRF3
GH22J028982 Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -8.1 -8068 6 GATAD2A TFE3 RCOR2 FOXA1 ZIC2 RXRB IRF2 SP1 ZNF239 ZNF600 ZNRF3 C22orf31 ZNRF3-AS1 CCDC117 ZNRF3-IT1 piR-57133-388 KREMEN1
GH22J028988 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.7 -3.5 -3451 2.3 ZNF341 RBM22 POLR2A ARNT ZFHX2 TBX21 MTA2 TAF1 EGR2 JUND C22orf31 ZNRF3-IT1 piR-57133-388 KREMEN1 ZNRF3
GH22J028975 Enhancer 1.2 ENCODE CraniofacialAtlas dbSUPER 0.4 -14.6 -14649 4.2 GATAD2A TFE3 RFX1 IKZF1 NFKBIZ ZNF692 RCOR2 PRDM1 RXRB IRF2 ZNRF3 C22orf31 HSCB TTC28 ZNRF3-IT1 piR-57133-388 KREMEN1
GH22J029003 Enhancer 1.2 ENCODE CraniofacialAtlas dbSUPER 0.4 +12.0 11972 2.3 HNRNPL GATAD2A RFX1 FOXA1 PRDM1 RXRB ZNF600 SCRT2 KMT2B MNT piR-32214-442 C22orf31 ZNRF3-AS1 ZNRF3-IT1 piR-48759-196 KREMEN1 ZNRF3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ZNRF3-IT1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ZNRF3-IT1 Gene

Genomic Locations for ZNRF3-IT1 Gene
chr22:28,992,721-29,018,621
(GRCh38/hg38)
Size:
25,901 bases
Orientation:
Plus strand
chr22:29,388,709-29,414,608
(GRCh37/hg19)
Size:
25,900 bases
Orientation:
Plus strand

Genomic View for ZNRF3-IT1 Gene

Genes around ZNRF3-IT1 on UCSC Golden Path with GeneCards custom track
ZNRF3-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ZNRF3-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNRF3-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ZNRF3-IT1 Gene

Proteins for ZNRF3-IT1 Gene

Post-translational modifications for ZNRF3-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZNRF3-IT1 Gene

Domains & Families for ZNRF3-IT1 Gene

Gene Families for ZNRF3-IT1 Gene

genes like me logo Genes that share domains with ZNRF3-IT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ZNRF3-IT1 Gene

Function for ZNRF3-IT1 Gene

Phenotypes From GWAS Catalog for ZNRF3-IT1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNRF3-IT1 Gene

Localization for ZNRF3-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZNRF3-IT1 Gene

Pathways & Interactions for ZNRF3-IT1 Gene

PathCards logo

SuperPathways for ZNRF3-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ZNRF3-IT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ZNRF3-IT1 Gene

Drugs & Compounds for ZNRF3-IT1 Gene

No Compound Related Data Available

Transcripts for ZNRF3-IT1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ZNRF3-IT1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001D20A3_9606 lncRNA 674 5

HGNC: 41440,

Ensembl: ENST00000412798 (view in UCSC) ,

LncBook: HSALNT0276714,

LNCipedia: ZNRF3-IT1:1,

NONCODE: NONHSAT084664.2,

URS00009B404F_9606 lncRNA 674 2

LncBook: HSALNT0276715,

NONCODE: NONHSAT192226.1,

ZNRF3-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNRF3-IT1 Gene

No ASD Table

Relevant External Links for ZNRF3-IT1 Gene

GeneLoc Exon Structure for
ZNRF3-IT1

No data available for mRNA/cDNA for ZNRF3-IT1 Gene

Expression for ZNRF3-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ZNRF3-IT1 Gene

genes like me logo Genes that share expression patterns with ZNRF3-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNRF3-IT1 Gene

Orthologs for ZNRF3-IT1 Gene

Evolution for ZNRF3-IT1 Gene

ENSEMBL:
Gene Tree for ZNRF3-IT1 (if available)
TreeFam:
Gene Tree for ZNRF3-IT1 (if available)

No data available for Orthologs for ZNRF3-IT1 Gene

Paralogs for ZNRF3-IT1 Gene

No data available for Paralogs for ZNRF3-IT1 Gene

Variants for ZNRF3-IT1 Gene

Additional Variant Information for ZNRF3-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNRF3-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ZNRF3-IT1 Gene

Disorders for ZNRF3-IT1 Gene

No disorders were found for ZNRF3-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ZNRF3-IT1 Gene

Publications for ZNRF3-IT1 Gene

No publications were found for ZNRF3-IT1 Gene.

No data available for Mastermind for ZNRF3-IT1 Gene

Products for ZNRF3-IT1 Gene

Sources for ZNRF3-IT1 Gene