Aliases for ZNRD2-DT Gene

Data sources for ZNRD2-DT Gene:

Subcategory (RNA class) for ZNRD2-DT Gene

lncRNA

Aliases for ZNRD2-DT Gene

External Ids for ZNRD2-DT Gene

Previous HGNC Symbols for ZNRD2-DT Gene

  • SSSCA1-AS1
  • ZNRD2-AS1

Summaries for ZNRD2-DT Gene

GeneCards Summary for ZNRD2-DT Gene

ZNRD2-DT (ZNRD2 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ZNRD2-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ZNRD2-DT Gene

Genomics for ZNRD2-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ZNRD2-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J065567 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 -3.4 -3425 12.3 TBP SP1 MXD4 ZBTB10 BCL11A FEZF1 SIX5 NR2C1 MNT DEK EHBP1L1 ZNRD2 FAM89B HSALNG0084918 PCNX3 SF1 SF3B2 KAT5 EIF1AD POLA2
GH11J065564 Enhancer 0.9 FANTOM5 ENCODE dbSUPER 0.7 +4.3 4342 2.6 SPI1 SCRT1 KDM1A PRDM10 ZBTB6 ZNF335 RF00017-945 CTSW PCNX3 KCNK7 MAP3K11 TIGD3 NEAT1 CDC42EP2 SIPA1 EHBP1L1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ZNRD2-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ZNRD2-DT Gene

Latest Assembly
chr11:65,569,220-65,570,413
(GRCh38/hg38)
Size:
1,194 bases
Orientation:
Minus strand

Previous Assembly
chr11:65,336,691-65,337,884
(GRCh37/hg19 by Entrez Gene)
Size:
1,194 bases
Orientation:
Minus strand

Genomic View for ZNRD2-DT Gene

Genes around ZNRD2-DT on UCSC Golden Path with GeneCards custom track
ZNRD2-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ZNRD2-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNRD2-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNRD2-DT Gene

Proteins for ZNRD2-DT Gene

Post-translational modifications for ZNRD2-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZNRD2-DT Gene

Domains & Families for ZNRD2-DT Gene

Gene Families for ZNRD2-DT Gene

genes like me logo Genes that share domains with ZNRD2-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ZNRD2-DT Gene

Function for ZNRD2-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNRD2-DT Gene

Localization for ZNRD2-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZNRD2-DT Gene

Pathways & Interactions for ZNRD2-DT Gene

PathCards logo

SuperPathways for ZNRD2-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for ZNRD2-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ZNRD2-DT Gene

Drugs & Compounds for ZNRD2-DT Gene

No Compound Related Data Available

Transcripts for ZNRD2-DT Gene

ZNRD2-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

mRNA/cDNA for ZNRD2-DT Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for ZNRD2-DT Gene

No ASD Table

Relevant External Links for ZNRD2-DT Gene

GeneLoc Exon Structure for
ZNRD2-DT

Expression for ZNRD2-DT Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ZNRD2-DT

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNRD2-DT Gene

Orthologs for ZNRD2-DT Gene

No data available for Orthologs and Evolution for ZNRD2-DT Gene

Paralogs for ZNRD2-DT Gene

No data available for Paralogs for ZNRD2-DT Gene

Variants for ZNRD2-DT Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for ZNRD2-DT Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for ZNRD2-DT Gene

Variant ID Type Subtype PubMed ID
dgv1969n54 CNV loss 21841781
nsv951018 CNV deletion 24416366

Additional Variant Information for ZNRD2-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNRD2-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for ZNRD2-DT Gene

Disorders for ZNRD2-DT Gene

Additional Disease Information for ZNRD2-DT

No disorders were found for ZNRD2-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNRD2-DT Gene

Publications for ZNRD2-DT Gene

  1. Meta-analysis of genome-wide association studies identifies novel loci that influence cupping and the glaucomatous process. (PMID: 25241763) Springelkamp H … Hammond CJ (Nature communications 2014) 3
  2. Hundreds of variants clustered in genomic loci and biological pathways affect human height. (PMID: 20881960) Lango Allen H … Hirschhorn JN (Nature 2010) 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for ZNRD2-DT Gene

Sources for ZNRD2-DT Gene