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This antigen is recognized by a subset of anti-centromere antibodies from patients with scleroderma and/or Sjogren's syndrome. Subcellular localization has not yet been established. [provided by RefSeq, Jul 2008] See more...
Aliases for ZNRD2 Gene
Aliases for ZNRD2 Gene
External Ids for ZNRD2 Gene
- HGNC: 11328
- NCBI Entrez Gene: 10534
- Ensembl: ENSG00000173465
- OMIM®: 606044
- UniProtKB/Swiss-Prot: O60232
Previous HGNC Symbols for ZNRD2 Gene
- SSSCA1
Previous GeneCards Identifiers for ZNRD2 Gene
- GC11P065573
- GC11P065575
- GC11P065596
- GC11P065626
- GC11P065813
Summaries for ZNRD2 Gene
-
This antigen is recognized by a subset of anti-centromere antibodies from patients with scleroderma and/or Sjogren's syndrome. Subcellular localization has not yet been established. [provided by RefSeq, Jul 2008]
GeneCards Summary for ZNRD2 Gene
ZNRD2 (Zinc Ribbon Domain Containing 2) is a Protein Coding gene. Diseases associated with ZNRD2 include Sjogren Syndrome.
UniProtKB/Swiss-Prot Summary for ZNRD2 Gene
-
Might play a role in mitosis. Antigenic molecule. Could be a centromere-associated protein. May induce anti-centromere antibodies.
Additional gene information for ZNRD2 Gene
- HGNC (11328)
- NCBI Entrez Gene (10534)
- Ensembl (ENSG00000173465)
- OMIM® (606044)
- UniProtKB/Swiss-Prot (O60232)
- Open Targets Platform(ENSG00000173465)
- Search for ZNRD2 at DataMed
- Search for ZNRD2 at HumanCyc
No data available for CIViC Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ZNRD2 Gene
Genomics for ZNRD2 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for ZNRD2 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around ZNRD2 on the GeneHancer Hub at the UCSC Golden Path
Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for ZNRD2
Genomic Locations for ZNRD2 Gene
Latest Assembly
- chr11:65,570,460-65,573,942
- (GRCh38/hg38)
- Size:
- 3,483 bases
- Orientation:
- Plus strand
Previous Assembly
- chr11:65,337,948-65,339,359
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 1,412 bases
- Orientation:
- Plus strand
- chr11:65,337,901-65,341,413
- (GRCh37/hg19 by Ensembl)
- Size:
- 3,513 bases
- Orientation:
- Plus strand
Genomic View for ZNRD2 Gene
Genes around ZNRD2 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 11q13.1 by HGNC
- 11q13.1 by Entrez Gene
- 11q13.1 by Ensembl
ZNRD2 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for ZNRD2 Gene
Proteins for ZNRD2 Gene
-
Protein details for ZNRD2 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- O60232-ZNRD2_HUMAN
- Recommended name:
- Protein ZNRD2
- Protein Accession:
- O60232
Protein attributes for ZNRD2 Gene
- Size:
- 199 amino acids
- Molecular mass:
- 21474 Da
- Quaternary structure:
- No Data Available
Post-translational modifications for ZNRD2 Gene
Other Protein References for ZNRD2 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibodies for research
- Novus Biologicals Antibodies for ZNRD2
- Invitrogen Antibodies for ZNRD2 (AFLGC-ZNRD2)
-
Boster Bio Antibodies for ZNRD2
-
Custom Antibody ServicesProSci Antibodies for ZNRD2
Protein products for research
-
OriGene Purified Proteins for ZNRD2
- Search Origene for MassSpec and Protein Over-expression Lysates for ZNRD2
- Origene Custom Protein Services for ZNRD2
- ProSpec Recombinant Proteins for ZNRD2
- antibodies-online: Show 6 available SSSCA1 Proteins ranked by validation data
- Compare Top SSSCA1 Proteins
-
Quality Products:
-
Abcam proteins for ZNRD2
Assay products for research
No data available for DME Specific Peptides for ZNRD2 Gene
Domains & Families for ZNRD2 Gene
Gene Families for ZNRD2 Gene
- Human Protein Atlas (HPA):
-
- Predicted intracellular proteins
Suggested Antigen Peptide Sequences for ZNRD2 Gene
- GenScript: Design optimal peptide antigens:
-
- Autoantigen p27 (SSA27_HUMAN)
No data available for Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ZNRD2 Gene
Function for ZNRD2 Gene
Molecular function for ZNRD2 Gene
- UniProtKB/Swiss-Prot Function:
- Might play a role in mitosis. Antigenic molecule. Could be a centromere-associated protein. May induce anti-centromere antibodies.
Phenotypes From GWAS Catalog for ZNRD2 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005515 | protein binding | IPI | 16189514 |
Phenotypes for ZNRD2 Gene
Animal Models for research
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for ZNRD2 - Starting at $85 >
- * ZNRD2 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
-
OriGene CRISPR knockouts for ZNRD2
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for ZNRD2
miRNA for ZNRD2 Gene
- miRTarBase miRNAs that target ZNRD2
-
- hsa-miR-222-3p (MIRT005790)
- hsa-miR-155-5p (MIRT020943)
- hsa-miR-16-5p (MIRT031953)
- hsa-miR-320a (MIRT044812)
- hsa-miR-24-3p (MIRT054710)
- hsa-miR-150-5p (MIRT731116)
- mmu-miR-221-3p (MIRT732474)
- hsa-miR-124-3p (MIRT732541)
- hsa-miR-196a-5p (MIRT732816)
- hsa-miR-222-5p (MIRT734819)
- hsa-miR-221-5p (MIRT735295)
miRNA products for research
Inhibitory RNAs for research
- Origene shrna, sirna, and RNAi products in human, mouse, rat for ZNRD2
- Browse OriGene Inhibitory RNA Products For ZNRD2
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ZNRD2
Clone products for research
- Applied Biological Materials (abm): Clones for ZNRD2 - Starting at $45 >
- * ZNRD2 as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Retro- | Protein Vector - Browse All
- * Viral Packaging Services and High Titer Production Services also available.
- Sino Biological Human cDNA Clone for ZNRD2
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for ZNRD2
Cell Lines for research
-
Horizon Cell Lines for ZNRD2
No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ZNRD2 Gene
Localization for ZNRD2 Gene
| Compartment | Confidence |
|---|---|
| extracellular | 2 |
| cytosol | 2 |
| cytoskeleton | 1 |
| nucleus | 1 |
- Cytosol (2)
No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for ZNRD2 Gene
Pathways & Interactions for ZNRD2 Gene
Interacting Proteins for ZNRD2 Gene
Selected Interacting proteins:
O60232-ZNRD2_HUMAN
ENSP00000312318
for ZNRD2 Gene via
UniProtKB
STRING
IID
GPS-Prot Interaction Network for ZNRD2
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000278 | mitotic cell cycle | TAS | 9486406 |
| GO:0007049 | cell cycle | IEA | -- |
| GO:0051301 | cell division | IEA | -- |
No data available for Pathways by source and SIGNOR curated interactions for ZNRD2 Gene
Transcripts for ZNRD2 Gene
mRNA/cDNA for ZNRD2 Gene
- 2 REFSEQ mRNAs :
- 4 NCBI additional mRNA sequence :
- 7 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000309328 769 nts (view in UCSC)
- ENST00000526433 739 nts (view in UCSC)
- ENST00000526877 713 nts (view in UCSC)
- ENST00000527413 532 nts (view in UCSC)
- ENST00000527920 806 nts (view in UCSC)
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for ZNRD2 - Starting at $85 >
- * ZNRD2 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
-
OriGene CRISPR knockouts for ZNRD2
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for ZNRD2
miRNA products for research
Inhibitory RNAs for research
- Origene shrna, sirna, and RNAi products in human, mouse, rat for ZNRD2
- Browse OriGene Inhibitory RNA Products For ZNRD2
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ZNRD2
Clone products for research
- Applied Biological Materials (abm): Clones for ZNRD2 - Starting at $45 >
- * ZNRD2 as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Retro- | Protein Vector - Browse All
- * Viral Packaging Services and High Titer Production Services also available.
- Sino Biological Human cDNA Clone for ZNRD2
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for ZNRD2
Relevant External Links for ZNRD2 Gene
- GeneLoc Exon Structure for
- ZNRD2
Expression for ZNRD2 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ZNRD2
SOURCE GeneReport for Unigene cluster for ZNRD2 Gene:
Hs.25723Evidence on tissue expression from TISSUES for ZNRD2 Gene
- Muscle(2.5)
- Nervous system(2.3)
- Intestine(2)
No Expression Related Data Available
Primer products for research
-
OriGene qPCR primer pairs for ZNRD2
-
OriGene qPCR primer pairs and template standards for ZNRD2
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNRD2 Gene
Orthologs for ZNRD2 Gene
This gene was present in the common ancestor of animals.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| Chimpanzee (Pan troglodytes) |
Mammalia | SSSCA1 31 |
|
OneToOne | |
| Dog (Canis familiaris) |
Mammalia | SSSCA1 30 31 |
|
OneToOne | |
| Cow (Bos Taurus) |
Mammalia | SSSCA1 30 31 |
|
OneToOne | |
| Rat (Rattus norvegicus) |
Mammalia | Sssca1 30 |
|
||
| Mouse (Mus musculus) |
Mammalia | Sssca1 30 31 |
|
OneToOne | |
| Znrd2 17 |
|
||||
| Oppossum (Monodelphis domestica) |
Mammalia | SSSCA1 31 |
|
OneToOne | |
| Platypus (Ornithorhynchus anatinus) |
Mammalia | SSSCA1 31 |
|
OneToOne | |
| Tropical Clawed Frog (Silurana tropicalis) |
Amphibia | sssca1 30 |
|
||
| Zebrafish (Danio rerio) |
Actinopterygii | sssca1 30 31 |
|
OneToOne | |
| Worm (Caenorhabditis elegans) |
Secernentea | Y39A1A.3 31 |
|
OneToOne | |
| Sea Squirt (Ciona savignyi) |
Ascidiacea | CSA.6817 31 |
|
OneToOne |
- Species where no ortholog for ZNRD2 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Eremothecium gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- Alpha proteobacteria (Wolbachia pipientis)
- Amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- Baker's yeast (Saccharomyces cerevisiae)
- Barley (Hordeum vulgare)
- Beta proteobacteria (Neisseria meningitidis)
- Bread mold (Neurospora crassa)
- Chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- Common water flea (Daphnia pulex)
- Corn (Zea mays)
- E. coli (Escherichia coli)
- Filamentous fungi (Aspergillus nidulans)
- Firmicute Bacteria (Streptococcus pneumoniae)
- Fission Yeast (Schizosaccharomyces pombe)
- Fruit Fly (Drosophila melanogaster)
- Green Algae (Chlamydomonas reinhardtii)
- Honey Bee (Apis mellifera)
- K. Lactis Yeast (Kluyveromyces lactis)
- Lizard (Anolis carolinensis)
- Loblloly Pine (Pinus taeda)
- Malaria Parasite (Plasmodium falciparum)
- Medicago Trunc (Medicago Truncatula)
- Moss (Physcomitrella patens)
- Orangutan (Pongo pygmaeus)
- Pig (Sus scrofa)
- Rainbow Trout (Oncorhynchus mykiss)
- Rice (Oryza sativa)
- Rice Blast Fungus (Magnaporthe grisea)
- Schistosome Parasite (Schistosoma mansoni)
- Sea Anemone (Nematostella vectensis)
- Sea Vase (Ciona intestinalis)
- Sea Urchin (Strongylocentrotus purpuratus)
- Sorghum (Sorghum bicolor)
- Soybean (Glycine max)
- Stem Rust Fungus (Puccinia graminis)
- Sugarcane (Saccharum officinarum)
- Thale Cress (Arabidopsis thaliana)
- Tomato (Lycopersicon esculentum)
- Toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- Wheat (Triticum aestivum)
Evolution for ZNRD2 Gene
- ENSEMBL:
- Gene Tree for ZNRD2 (if available)
- TreeFam:
- Gene Tree for ZNRD2 (if available)
- Aminode:
- Evolutionary constrained regions (ECRs) for ZNRD2: view image
Paralogs for ZNRD2 Gene
No data available for Paralogs for ZNRD2 Gene
Variants for ZNRD2 Gene
Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for ZNRD2 Gene
| SNP ID | Clinical significance and condition | Chr 11 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs35971725 | Benign: not provided. - | 65,570,646(+) |
C/Tp.Thr21Met NM_006396.3(ZNRD2):c.62C>T (p.Thr21Met) |
MISSENSE_VARIANT,FIVE_PRIME_UTR | |
| rs7940495 | Benign: not provided | 65,570,520(+) |
T/C NM_006396.3(ZNRD2):c.19+10T>C |
FIVE_PRIME_UTR_VARIANT,INTRON |
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv1969n54 | CNV | loss | 21841781 |
| nsv951018 | CNV | deletion | 24416366 |
Residual Variation Intolerance Score:
49.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
2.89;
48.59% of all genes are more intolerant (likely to be disease-causing)
Additional Variant Information for ZNRD2 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- ZNRD2
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNRD2 Gene
Disorders for ZNRD2 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| sjogren syndrome |
|
|
Search ZNRD2 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for ZNRD2
- Atlas
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
- Open Targets Platform
- Open Targets Platform
No data available for UniProtKB/Swiss-Prot and Genatlas for ZNRD2 Gene
Publications for ZNRD2 Gene
- cDNA cloning of a novel autoantigen targeted by a minor subset of anti-centromere antibodies. (PMID: 9486406) Muro Y … Sugimoto K (Clinical and experimental immunology 1998) 2 3 4
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4
- Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms. (PMID: 33060197) Gordon DE … Krogan NJ (Science (New York, N.Y.) 2020) 3
- Systems analysis of RhoGEF and RhoGAP regulatory proteins reveals spatially organized RAC1 signalling from integrin adhesions. (PMID: 32203420) Müller PM … Rocks O (Nature cell biology 2020) 3
- A reference map of the human binary protein interactome. (PMID: 32296183) Luck K … Calderwood MA (Nature 2020) 3
ExternalLinks
Products for ZNRD2 Gene
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- OriGene Purified Proteins for ZNRD2
- Search Origene for MassSpec and Protein Over-expression Lysates for ZNRD2
- Origene Custom Protein Services for ZNRD2
- Origene shrna, sirna, and RNAi products in human, mouse, rat for ZNRD2
- Browse OriGene Inhibitory RNA Products For ZNRD2
- OriGene qPCR primer pairs for ZNRD2
- OriGene qPCR primer pairs and template standards for ZNRD2
- OriGene CRISPR knockouts for ZNRD2
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For ZNRD2
- Sino Biological Human cDNA Clone for ZNRD2
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
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- Browse cDNA Clones
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- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Novus Biologicals Antibodies for ZNRD2
- Novus Biologicals proteins and lysates for ZNRD2
- Browse Antibodies
- Browse Peptides and Proteins
- Browse Lysates
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- Abcam proteins for ZNRD2
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- Browse Monoclonal Antibodies
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- VectorBuilder Custom and pre-made DNA vectors for ZNRD2 (ie. gene expression, shRNA knockdown, CRISPR)
- VectorBuilder Viral vectors for ZNRD2 (ie. lentivirus, AAV, adenovirus)
- VectorBuilder CRISPR vectors for ZNRD2 (ie. knockout, knockin, CRISPRa, CRISPRi)
- VectorBuilder Virus packaging for ZNRD2 CRISPR vectors (ie. lentivirus, AAV, adenovirus)
- VectorBuilder Stable cell line generation for ZNRD2
- antibodies-online: Show 12 available SSSCA1 Antibodies ranked by validation data
- Compare Top SSSCA1 Antibodies
- antibodies-online: Search results for available SSSCA1 related products ranked by validation data
- antibodies-online: Show 6 available SSSCA1 Proteins ranked by validation data
- Compare Top SSSCA1 Proteins
- Quality Products:
- Custom Antibody ServicesProSci Antibodies for ZNRD2
- Search for ZNRD2 Proteins at ProSci
- Horizon Cell Lines for ZNRD2
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for ZNRD2
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for ZNRD2
- Search GeneCopoeia for miRNA 3'UTR Target clone products for ZNRD2
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ZNRD2
- Boster Bio Antibodies for ZNRD2
- Browse Boster Bio ELISA Kits
Sources for ZNRD2 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
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- (29) SOURCE
- (30) HomoloGene
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- (32) euGenes
- (33) SGD
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- (35) WormBase
- (36) Pseudogene
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- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
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- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
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