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Aliases for ZNRD1ASP Gene

Aliases for ZNRD1ASP Gene

  • Zinc Ribbon Domain Containing 1 Antisense, Pseudogene 2 3 5
  • ZNRD1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • HLA Complex Group 8 2 3
  • ZNRD1 Antisense RNA (Non-Protein Coding) 2
  • Chromosome 6 Open Reading Frame 12 2
  • Non-Protein Coding RNA 171 2
  • ZNRD1 Antisense RNA 1 2
  • NCRNA00171 3
  • HCGVIII-1 3
  • ZNRD1-AS1 3
  • ZNRD1AS1 3
  • ZNRD1-AS 3
  • HCGVIII 3
  • C6orf12 3
  • ZNRD1AS 3
  • TCTEX4 3
  • HTEX4 3
  • HCG8 3

External Ids for ZNRD1ASP Gene

Previous HGNC Symbols for ZNRD1ASP Gene

  • C6orf12
  • NCRNA00171
  • ZNRD1AS
  • ZNRD1-AS
  • ZNRD1-AS1
  • HCG8

Previous GeneCards Identifiers for ZNRD1ASP Gene

  • GC06M030086
  • GC06M030164
  • GC06M030210
  • GC06M030231
  • GC06M030275
  • GC06M030310

Summaries for ZNRD1ASP Gene

GeneCards Summary for ZNRD1ASP Gene

ZNRD1ASP (Zinc Ribbon Domain Containing 1 Antisense, Pseudogene) is a Pseudogene. Diseases associated with ZNRD1ASP include Endometrial Cancer and Cervical Cancer.

Additional gene information for ZNRD1ASP Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNRD1ASP Gene

Genomics for ZNRD1ASP Gene

GeneHancer (GH) Regulatory Elements for ZNRD1ASP Gene

Promoters and enhancers for ZNRD1ASP Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J030060 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 650.7 -0.1 -73 3.3 MLX ZFP64 DMAP1 YY1 SLC30A9 E2F8 ZNF143 SP3 NFYC SSRP1 ZNRD1 ENSG00000278773 GC06M030371 GC06M030373 GC06M030375 GC06M030380 GC06M030381 GC06M030383 GC06M030385 GC06M030386
GH06J030162 Promoter/Enhancer 1.5 EPDnew ENCODE 74.1 -102.1 -102126 2.8 ZFP64 ARID4B DMAP1 YY1 SLC30A9 ZNF213 SP3 SP5 ZC3H11A MXD4 TRIM10 TRIM15 MDC1 GTF2H4 HCG18 ZNRD1ASP TRIM39 PPP1R10 ETF1P1 PAIP1P1
GH06J030907 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 42.3 -846.8 -846817 2.2 CLOCK DMAP1 YBX1 IRF4 YY1 ZNF213 E2F8 ZNF416 ZNF143 ZNF548 GTF2H4 VARS2 GC06P032276 MDC1 DDX39B LY6G5B LSM2 TRIM39 DHX16 PPP1R10
GH06J030611 Promoter/Enhancer 2.6 EPDnew Ensembl ENCODE dbSUPER 29 -553.9 -553912 8.7 CLOCK MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 PPP1R10 MRPS18B MDC1 DDX39B TRIM39 NRM DHX16 ZNRD1 ABCF1 TRIM26
GH06J030715 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 19.1 -657.9 -657886 7.7 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 MDC1 TUBB DDX39B LY6G5B TRIM39 DHX16 PPP1R10 ZNRD1 PAIP1P1 NRM
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ZNRD1ASP on UCSC Golden Path with GeneCards custom track

Genomic Locations for ZNRD1ASP Gene

Genomic Locations for ZNRD1ASP Gene
chr6:30,001,011-30,061,640
(GRCh38/hg38)
Size:
60,630 bases
Orientation:
Minus strand
chr6:29,978,606-29,980,440
(GRCh37/hg19)
Size:
1,835 bases
Orientation:
Minus strand

Genomic View for ZNRD1ASP Gene

Genes around ZNRD1ASP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNRD1ASP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNRD1ASP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for ZNRD1ASP Gene

Post-translational modifications for ZNRD1ASP Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZNRD1ASP Gene

Domains & Families for ZNRD1ASP Gene

Suggested Antigen Peptide Sequences for ZNRD1ASP Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for ZNRD1ASP Gene

Function for ZNRD1ASP Gene

Phenotypes From GWAS Catalog for ZNRD1ASP Gene

genes like me logo Genes that share phenotypes with ZNRD1ASP: view

Animal Model Products

miRNA for ZNRD1ASP Gene

miRTarBase miRNAs that target ZNRD1ASP

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ZNRD1ASP Gene

Localization for ZNRD1ASP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZNRD1ASP Gene

Pathways & Interactions for ZNRD1ASP Gene

SuperPathways for ZNRD1ASP Gene

No Data Available

Interacting Proteins for ZNRD1ASP Gene

Gene Ontology (GO) - Biological Process for ZNRD1ASP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZNRD1ASP Gene

Drugs & Compounds for ZNRD1ASP Gene

No Compound Related Data Available

Transcripts for ZNRD1ASP Gene

mRNA/cDNA for ZNRD1ASP Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNRD1ASP Gene

No ASD Table

Relevant External Links for ZNRD1ASP Gene

GeneLoc Exon Structure for
ZNRD1ASP
ECgene alternative splicing isoforms for
ZNRD1ASP

Expression for ZNRD1ASP Gene

NURSA nuclear receptor signaling pathways regulating expression of ZNRD1ASP Gene:

ZNRD1ASP
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNRD1ASP Gene

Orthologs for ZNRD1ASP Gene

Evolution for ZNRD1ASP Gene

ENSEMBL:
Gene Tree for ZNRD1ASP (if available)
TreeFam:
Gene Tree for ZNRD1ASP (if available)

No data available for Orthologs for ZNRD1ASP Gene

Paralogs for ZNRD1ASP Gene

No data available for Paralogs for ZNRD1ASP Gene

Variants for ZNRD1ASP Gene

Sequence variations from dbSNP and Humsavar for ZNRD1ASP Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000036565 -- 30,046,926(-) C/G intron_variant
rs1000056699 -- 30,002,686(-) C/G non_coding_transcript_variant
rs1000069975 -- 30,035,401(-) T/C intron_variant
rs1000156249 -- 30,039,836(-) T/C intron_variant
rs1000187843 -- 30,030,555(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ZNRD1ASP Gene

Variant ID Type Subtype PubMed ID
esv2731777 CNV deletion 23290073
esv2731777 CNV deletion 23290073
esv2731778 CNV deletion 23290073
esv2759412 CNV gain+loss 17122850
esv3343005 CNV insertion 20981092
esv3411275 CNV duplication 20981092
esv3411275 CNV duplication 20981092
esv3570888 CNV loss 25503493
esv3570888 CNV loss 25503493
esv3608501 CNV loss 21293372
nsv1074389 CNV deletion 25765185
nsv1074389 CNV deletion 25765185
nsv1122126 CNV deletion 24896259
nsv1122126 CNV deletion 24896259
nsv1144137 CNV deletion 24896259
nsv1144137 CNV deletion 24896259
nsv508398 CNV deletion 20534489
nsv508398 CNV deletion 20534489
nsv601264 CNV loss 21841781
nsv601264 CNV loss 21841781
nsv601475 CNV loss 21841781
nsv819291 CNV loss 19587683
nsv969374 CNV duplication 23825009
nsv981126 CNV duplication 23825009
nsv981127 CNV duplication 23825009
esv2670487 CNV deletion 23128226
esv2641340 CNV deletion 19546169
esv1527047 CNV insertion 17803354
dgv993e201 CNV deletion 23290073
dgv1088e199 CNV deletion 23128226

Additional Variant Information for ZNRD1ASP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNRD1ASP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ZNRD1ASP Gene

Disorders for ZNRD1ASP Gene

MalaCards: The human disease database

(5) MalaCards diseases for ZNRD1ASP Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
endometrial cancer
  • endometrial cancer, familial
cervical cancer
  • cervical cancer, somatic
hepatocellular carcinoma
  • hcc
lung cancer
  • lung cancer, susceptibility to
severe cutaneous adverse reaction
  • sjs
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with ZNRD1ASP: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ZNRD1ASP Gene

Publications for ZNRD1ASP Gene

  1. Expression quantitative trait loci in long non-coding RNA ZNRD1-AS1 influence both HBV infection and hepatocellular carcinoma development. (PMID: 25110835) Wen J … Hu Z (Molecular carcinogenesis 2015) 2 3 58
  2. Transcriptional analysis of the 69-kb sequence centromeric to HLA-J: a dense and complex structure of five genes. (PMID: 11130983) Coriton O … Mosser J (Mammalian genome : official journal of the International Mammalian Genome Society 2000) 2 3 58
  3. HTEX4, a new human gene in the MHC class I region, undergoes alternative splicing and polyadenylation processes in testis. (PMID: 9553157) Lepourcelet M … Mosser J (Immunogenetics 1998) 2 3 58
  4. Single nucleotide polymorphisms in ZNRD1-AS1 increase cancer risk in an Asian population. (PMID: 28052024) Wang PY … Xie SY (Oncotarget 2017) 3 58
  5. Strong evidence for LncRNA ZNRD1-AS1, and its functional Cis- eQTL locus contributing more to the susceptibility of lung cancer. (PMID: 27166266) Li D … Peng L (Oncotarget 2016) 3 58

Products for ZNRD1ASP Gene

Sources for ZNRD1ASP Gene

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