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Aliases for ZNRD1ASP Gene

Aliases for ZNRD1ASP Gene

  • Zinc Ribbon Domain Containing 1 Antisense, Pseudogene 2 3 5
  • ZNRD1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • HLA Complex Group 8 2 3
  • ZNRD1 Antisense RNA (Non-Protein Coding) 2
  • Chromosome 6 Open Reading Frame 12 2
  • Non-Protein Coding RNA 171 2
  • ZNRD1 Antisense RNA 1 2
  • NCRNA00171 3
  • HCGVIII-1 3
  • ZNRD1-AS1 3
  • ZNRD1AS1 3
  • ZNRD1-AS 3
  • HCGVIII 3
  • C6orf12 3
  • ZNRD1AS 3
  • TCTEX4 3
  • HTEX4 3
  • HCG8 3

External Ids for ZNRD1ASP Gene

Previous HGNC Symbols for ZNRD1ASP Gene

  • C6orf12
  • NCRNA00171
  • ZNRD1AS
  • ZNRD1-AS
  • ZNRD1-AS1
  • HCG8

Previous GeneCards Identifiers for ZNRD1ASP Gene

  • GC06M030086
  • GC06M030164
  • GC06M030210
  • GC06M030231
  • GC06M030275

Summaries for ZNRD1ASP Gene

GeneCards Summary for ZNRD1ASP Gene

ZNRD1ASP (Zinc Ribbon Domain Containing 1 Antisense, Pseudogene) is a Pseudogene. Diseases associated with ZNRD1ASP include Post-Traumatic Stress Disorder and Severe Cutaneous Adverse Reaction.

Additional gene information for ZNRD1ASP Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNRD1ASP Gene

Genomics for ZNRD1ASP Gene

GeneHancer (GH) Regulatory Elements for ZNRD1ASP Gene

Promoters and enhancers for ZNRD1ASP Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I030060 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 550.8 -0.1 -73 3.3 HDGF PKNOX1 SMAD1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNRD1 ENSG00000278773 GC06M030331 GC06M030334 GC06M030339 GC06M030344 GC06M030345 GC06M030346 GC06M030348 GC06M030349
GH06I030162 Promoter/Enhancer 1.5 EPDnew ENCODE 96.8 -102.1 -102126 2.8 ZFP64 ARID4B DMAP1 YY1 SLC30A9 ZNF213 ZNF302 SP3 SP5 ZC3H11A TRIM10 TRIM15 MDC1 GTF2H4 HCG18 ZNRD1ASP PPP1R10 TRIM39 ETF1P1 PAIP1P1
GH06I030907 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 42.3 -846.8 -846817 2.2 CLOCK DMAP1 YBX1 IRF4 YY1 ZNF213 E2F8 ZNF416 ZNF143 ZNF548 GTF2H4 VARS2 GC06P031581 MDC1 DDX39B LY6G5B TRIM39 LSM2 PPP1R10 HCG18
GH06I029940 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 17.1 +119.4 119379 3.7 HDGF PKNOX1 SMAD1 ARID4B DMAP1 ZNF2 YY1 GLIS2 ZNF143 ATF7 HLA-A HCG4P5 PIR61557 HLA-J HLA-T HLA-G HLA-H HLA-W HLA-K HCG4P3
GH06I029672 Enhancer 0.8 dbSUPER 45.4 +388.5 388461 1.7 ZBTB21 ZFP64 ZNF140 ZNF266 ZNF697 ZNF664 ZNF213 RBAK ZNF354C GLI2 ZFP57 ZNRD1ASP ZNF311 HCG18 PPP1R10 HCG4P7 PAIP1P1 TRIM39 HLA-H GABBR1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ZNRD1ASP on UCSC Golden Path with GeneCards custom track

Genomic Locations for ZNRD1ASP Gene

Genomic Locations for ZNRD1ASP Gene
chr6:30,001,011-30,061,640
(GRCh38/hg38)
Size:
60,630 bases
Orientation:
Minus strand
chr6:29,978,606-29,980,440
(GRCh37/hg19)

Genomic View for ZNRD1ASP Gene

Genes around ZNRD1ASP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNRD1ASP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNRD1ASP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for ZNRD1ASP Gene

Post-translational modifications for ZNRD1ASP Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZNRD1ASP Gene

Domains & Families for ZNRD1ASP Gene

Suggested Antigen Peptide Sequences for ZNRD1ASP Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for ZNRD1ASP Gene

Function for ZNRD1ASP Gene

Phenotypes From GWAS Catalog for ZNRD1ASP Gene

Phenotypes for ZNRD1ASP Gene

genes like me logo Genes that share phenotypes with ZNRD1ASP: view

Animal Model Products

miRNA for ZNRD1ASP Gene

miRTarBase miRNAs that target ZNRD1ASP

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ZNRD1ASP Gene

Localization for ZNRD1ASP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZNRD1ASP Gene

Pathways & Interactions for ZNRD1ASP Gene

SuperPathways for ZNRD1ASP Gene

No Data Available

Interacting Proteins for ZNRD1ASP Gene

Gene Ontology (GO) - Biological Process for ZNRD1ASP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZNRD1ASP Gene

Drugs & Compounds for ZNRD1ASP Gene

No Compound Related Data Available

Transcripts for ZNRD1ASP Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNRD1ASP Gene

No ASD Table

Relevant External Links for ZNRD1ASP Gene

GeneLoc Exon Structure for
ZNRD1ASP
ECgene alternative splicing isoforms for
ZNRD1ASP

Expression for ZNRD1ASP Gene

NURSA nuclear receptor signaling pathways regulating expression of ZNRD1ASP Gene:

ZNRD1ASP
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNRD1ASP Gene

Orthologs for ZNRD1ASP Gene

Evolution for ZNRD1ASP Gene

ENSEMBL:
Gene Tree for ZNRD1ASP (if available)
TreeFam:
Gene Tree for ZNRD1ASP (if available)

No data available for Orthologs for ZNRD1ASP Gene

Paralogs for ZNRD1ASP Gene

No data available for Paralogs for ZNRD1ASP Gene

Variants for ZNRD1ASP Gene

Sequence variations from dbSNP and Humsavar for ZNRD1ASP Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000036565 -- 30,046,926(-) C/G intron_variant
rs1000056699 -- 30,002,686(-) C/G non_coding_transcript_variant
rs1000069975 -- 30,035,401(-) T/C intron_variant
rs1000156249 -- 30,039,836(-) T/C intron_variant
rs1000187843 -- 30,030,555(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ZNRD1ASP Gene

Variant ID Type Subtype PubMed ID
esv2731777 CNV deletion 23290073
esv2731777 CNV deletion 23290073
esv2670487 CNV deletion 23128226
esv2641340 CNV deletion 19546169
esv1527047 CNV insertion 17803354
dgv993e201 CNV deletion 23290073
dgv1088e199 CNV deletion 23128226
nsv981127 CNV duplication 23825009
nsv981126 CNV duplication 23825009
nsv969374 CNV duplication 23825009
nsv819291 CNV loss 19587683
nsv601475 CNV loss 21841781
nsv601264 CNV loss 21841781
nsv601264 CNV loss 21841781
nsv508398 CNV deletion 20534489
nsv508398 CNV deletion 20534489
nsv1144137 CNV deletion 24896259
nsv1144137 CNV deletion 24896259
nsv1122126 CNV deletion 24896259
nsv1122126 CNV deletion 24896259
nsv1074389 CNV deletion 25765185
nsv1074389 CNV deletion 25765185
esv3608501 CNV loss 21293372
esv3570888 CNV loss 25503493
esv3570888 CNV loss 25503493
esv3411275 CNV duplication 20981092
esv3411275 CNV duplication 20981092
esv3343005 CNV insertion 20981092
esv2759412 CNV gain+loss 17122850
esv2731778 CNV deletion 23290073

Additional Variant Information for ZNRD1ASP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNRD1ASP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ZNRD1ASP Gene

Disorders for ZNRD1ASP Gene

MalaCards: The human disease database

(2) MalaCards diseases for ZNRD1ASP Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
post-traumatic stress disorder
  • traumatic neurosis
severe cutaneous adverse reaction
  • severe cutaneous adverse reaction, susceptibility to
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with ZNRD1ASP: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ZNRD1ASP Gene

Publications for ZNRD1ASP Gene

  1. Expression quantitative trait loci in long non-coding RNA ZNRD1-AS1 influence both HBV infection and hepatocellular carcinoma development. (PMID: 25110835) Wen J … Hu Z (Molecular carcinogenesis 2015) 2 3 58
  2. Transcriptional analysis of the 69-kb sequence centromeric to HLA-J: a dense and complex structure of five genes. (PMID: 11130983) Coriton O … Mosser J (Mammalian genome : official journal of the International Mammalian Genome Society 2000) 2 3 58
  3. HTEX4, a new human gene in the MHC class I region, undergoes alternative splicing and polyadenylation processes in testis. (PMID: 9553157) Lepourcelet M … Mosser J (Immunogenetics 1998) 2 3 58
  4. Strong evidence for LncRNA ZNRD1-AS1, and its functional Cis- eQTL locus contributing more to the susceptibility of lung cancer. (PMID: 27166266) Li D … Peng L (Oncotarget 2016) 3 58
  5. Genome-wide gene-based analysis suggests an association between Neuroligin 1 (NLGN1) and post-traumatic stress disorder. (PMID: 27219346) Kilaru V … Ressler KJ (Translational psychiatry 2016) 3 58

Products for ZNRD1ASP Gene

Sources for ZNRD1ASP Gene

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