Aliases for ZNNT1 Gene

Subcategory (RNA class) for ZNNT1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ZNNT1 Gene

  • ZNF706 Neighboring Transcript 1 2 3 5
  • ZNNT1 2 5
  • NONHSAG050913.2 91
  • HSALNG0067345 164
  • Lnc-ZNF706-1 165

External Ids for ZNNT1 Gene

Previous GeneCards Identifiers for ZNNT1 Gene

  • GC08U902904

Summaries for ZNNT1 Gene

GeneCards Summary for ZNNT1 Gene

ZNNT1 (ZNF706 Neighboring Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ZNNT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ZNNT1 Gene

Genomics for ZNNT1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ZNNT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J101168 Enhancer 0.6 Ensembl 600.7 +1.7 1738 0.2 RXRB CEBPA FOSL2 BCL6 HOMEZ HNF4A RXRA RARA TEAD3 NR2F6 MG207681 ZNNT1 ZNF706 YWHAZ
GH08J101169 Enhancer 0.2 Ensembl 600.7 +1.3 1338 0.2 ZNNT1 ZNF706 MG207681 YWHAZ
GH08J101162 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 +5.1 5105 5.7 CTCF YY1 RAD21 CTBP1 HCFC1 GATA3 SPI1 CREM ZBTB40 ATF3 MG207681 LOC100419977 ZNF706 ZNNT1 lnc-GRHL2-5 YWHAZ
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ZNNT1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ZNNT1 Gene

Genomic Locations for ZNNT1 Gene
chr8:101,166,805-101,170,239
(GRCh38/hg38)
Size:
3,435 bases
Orientation:
Minus strand
chr8:102,179,033-102,181,857
(GRCh37/hg19)
Size:
2,825 bases
Orientation:
Minus strand

Genomic View for ZNNT1 Gene

Genes around ZNNT1 on UCSC Golden Path with GeneCards custom track
ZNNT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ZNNT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNNT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNNT1 Gene

Proteins for ZNNT1 Gene

No data available for DME Specific Peptides for ZNNT1 Gene

Domains & Families for ZNNT1 Gene

Gene Families for ZNNT1 Gene

genes like me logo Genes that share domains with ZNNT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ZNNT1 Gene

Function for ZNNT1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNNT1 Gene

Localization for ZNNT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZNNT1 Gene

Pathways & Interactions for ZNNT1 Gene

PathCards logo

SuperPathways for ZNNT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ZNNT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ZNNT1 Gene

Drugs & Compounds for ZNNT1 Gene

No Compound Related Data Available

Transcripts for ZNNT1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ZNNT1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000B93EB_9606 lncRNA 2825 4

HGNC: 54438,

Ensembl: ENST00000565617 (view in UCSC) ,

LNCipedia: lnc-ZNF706-1:1,

NONCODE: NONHSAT128043.2,

URS000194B0FA_9606 lncRNA 3435 1

RefSeq: NR_164368,

URS00009C5A8B_9606 lncRNA 224 2

LncBook: HSALNT0141208,

NONCODE: NONHSAT217428.1,

ZNNT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ZNNT1 Gene

No ASD Table

Relevant External Links for ZNNT1 Gene

GeneLoc Exon Structure for
ZNNT1

No data available for mRNA/cDNA for ZNNT1 Gene

Expression for ZNNT1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNNT1 Gene

Orthologs for ZNNT1 Gene

Evolution for ZNNT1 Gene

ENSEMBL:
Gene Tree for ZNNT1 (if available)
TreeFam:
Gene Tree for ZNNT1 (if available)

No data available for Orthologs for ZNNT1 Gene

Paralogs for ZNNT1 Gene

No data available for Paralogs for ZNNT1 Gene

Variants for ZNNT1 Gene

Additional dbSNP identifiers (rs#s) for ZNNT1 Gene

Additional Variant Information for ZNNT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNNT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ZNNT1 Gene

Disorders for ZNNT1 Gene

Additional Disease Information for ZNNT1

No disorders were found for ZNNT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNNT1 Gene

Publications for ZNNT1 Gene

  1. ZNNT1 long noncoding RNA induces autophagy to inhibit tumorigenesis of uveal melanoma by regulating key autophagy gene expression. (PMID: 31462126) Li P … Fan X (Autophagy 2019) 2 3

No data available for Mastermind for ZNNT1 Gene

Products for ZNNT1 Gene

Sources for ZNNT1 Gene