Aliases for ZNF883 Gene

Aliases for ZNF883 Gene

  • Zinc Finger Protein 883 2 3 4 5
  • ZNF883 5

External Ids for ZNF883 Gene

Previous GeneCards Identifiers for ZNF883 Gene

  • GC09M115760
  • GC09M085357
  • GC09M112997

Summaries for ZNF883 Gene

GeneCards Summary for ZNF883 Gene

ZNF883 (Zinc Finger Protein 883) is a Protein Coding gene.

UniProtKB/Swiss-Prot Summary for ZNF883 Gene

No data available for Entrez Gene Summary , CIViC Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ZNF883 Gene

Genomics for ZNF883 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ZNF883 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J113011 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas 250.7 +0.1 126 1.8 MXD4 SIX5 MNT ETS1 MBD2 HOMEZ ZNF610 THAP11 FOXA2 HCFC1 ZNF883 PRPF4 ZFP37 CDC26 ZNF618 NONHSAG053226.2 lnc-ZFP37-1 ENSG00000285447 SLC46A2 RF00017-7835
GH09J113138 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 2.1 -127.3 -127307 1.7 MXD4 CEBPA THAP11 FOXA2 ZNF511 SMAD4 SAP130 ZSCAN9 ETV4 RARA FAM225B ALAD ZNF883 HSALNG0073811 SLC31A2 piR-50475 ZFP37 RF00017-7835
GH09J112747 Enhancer 0.9 FANTOM5 ENCODE dbSUPER 1.4 +265.0 264981 0.4 CEBPA SAP130 SOX5 CEBPG KDM1A GATAD2A XRCC5 SOX13 INIP KIAA1958 SNX30 ZFP37 ZNF883 ENSG00000226609 HSALNG0073790
GH09J113086 Enhancer 0.2 Ensembl 5.8 -76.0 -76040 4.6 ENSG00000285370 FAM225B ZNF883 piR-50974 HSALNG0073808 ZFP37 SLC31A2 RF00017-7835
GH09J112903 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.1 +109.2 109226 1.2 CEBPA MNT DEK ZNF217 CTCF BHLHE40 HOMEZ CEBPB ARNT REST LOC112268054 lnc-SLC46A2-2 ENSG00000226609 SNX30 SLC46A2 ZNF883
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ZNF883 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for ZNF883

Genomic Locations for ZNF883 Gene

Latest Assembly
chr9:112,957,722-113,012,227
(GRCh38/hg38)
Size:
54,506 bases
Orientation:
Minus strand

Previous Assembly
chr9:115,759,400-115,774,472
(GRCh37/hg19 by Entrez Gene)
Size:
15,073 bases
Orientation:
Minus strand

chr9:115,759,495-115,774,507
(GRCh37/hg19 by Ensembl)
Size:
15,013 bases
Orientation:
Minus strand

Genomic View for ZNF883 Gene

Genes around ZNF883 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF883 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF883 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF883 Gene

Proteins for ZNF883 Gene

  • Protein details for ZNF883 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0CG24-ZN883_HUMAN
    Recommended name:
    Zinc finger protein 883
    Protein Accession:
    P0CG24

    Protein attributes for ZNF883 Gene

    Size:
    379 amino acids
    Molecular mass:
    43967 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ZNF883 Gene

Post-translational modifications for ZNF883 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZNF883 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for ZNF883 Gene

Domains & Families for ZNF883 Gene

Gene Families for ZNF883 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Transcription factors

Protein Domains for ZNF883 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for ZNF883 Gene

GenScript: Design optimal peptide antigens:
  • Zinc finger protein 883 (ZN883_HUMAN)

Graphical View of Domain Structure for InterPro Entry

P0CG24

UniProtKB/Swiss-Prot:

ZN883_HUMAN :
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
genes like me logo Genes that share domains with ZNF883: view

Function for ZNF883 Gene

Molecular function for ZNF883 Gene

UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation.

Phenotypes From GWAS Catalog for ZNF883 Gene

Gene Ontology (GO) - Molecular Function for ZNF883 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IBA 21873635
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IBA 21873635
GO:0005515 protein binding IPI 32296183
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF883: view
genes like me logo Genes that share phenotypes with ZNF883: view

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ZNF883

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNF883 Gene

Localization for ZNF883 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF883 Gene

Gene Ontology (GO) - Cellular Components for ZNF883 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZNF883: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for ZNF883 Gene

Pathways & Interactions for ZNF883 Gene

PathCards logo

SuperPathways for ZNF883 Gene

No Data Available

Interacting Proteins for ZNF883 Gene

Selected Interacting proteins: P0CG24-ZN883_HUMAN for ZNF883 Gene via UniProtKB

Symbol External ID(s) Details
CCDC125

Gene Ontology (GO) - Biological Process for ZNF883 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006357 regulation of transcription by RNA polymerase II IBA 21873635
genes like me logo Genes that share ontologies with ZNF883: view

No data available for Pathways by source and SIGNOR curated interactions for ZNF883 Gene

Drugs & Compounds for ZNF883 Gene

No Compound Related Data Available

Transcripts for ZNF883 Gene

mRNA/cDNA for ZNF883 Gene

1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
6 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ZNF883

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF883 Gene

No ASD Table

Relevant External Links for ZNF883 Gene

GeneLoc Exon Structure for
ZNF883

Expression for ZNF883 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ZNF883 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ZNF883

SOURCE GeneReport for Unigene cluster for ZNF883 Gene:

Hs.192877
genes like me logo Genes that share expression patterns with ZNF883: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF883 Gene

Orthologs for ZNF883 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for ZNF883 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia ZNF883 30
  • 98.42 (n)
Species where no ortholog for ZNF883 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for ZNF883 Gene

ENSEMBL:
Gene Tree for ZNF883 (if available)
TreeFam:
Gene Tree for ZNF883 (if available)

Paralogs for ZNF883 Gene

(533) SIMAP similar genes for ZNF883 Gene using alignment to 1 proteins:

  • ZN883_HUMAN
genes like me logo Genes that share paralogs with ZNF883: view

No data available for Paralogs for ZNF883 Gene

Variants for ZNF883 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for ZNF883 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for ZNF883 Gene

Variant ID Type Subtype PubMed ID
dgv7703n100 CNV loss 25217958
esv2759710 CNV gain 17122850
esv3891712 CNV loss 25118596
nsv1161899 CNV deletion 26073780
nsv466490 CNV loss 19166990
nsv466491 CNV loss 19166990
nsv615201 CNV loss 21841781
nsv615203 CNV loss 21841781
nsv825050 CNV gain 20364138
nsv831691 CNV loss 17160897

Additional Variant Information for ZNF883 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF883

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for ZNF883 Gene

Disorders for ZNF883 Gene

Additional Disease Information for ZNF883

No disorders were found for ZNF883 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF883 Gene

Publications for ZNF883 Gene

  1. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray SJ … Dunham I (Nature 2004) 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4
  3. A reference map of the human binary protein interactome. (PMID: 32296183) Luck K … Calderwood MA (Nature 2020) 3
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. (PMID: 21873635) Gaudet P … Thomas PD (Briefings in bioinformatics 2011) 3

Products for ZNF883 Gene

Sources for ZNF883 Gene