Aliases for ZNF84-DT Gene

Subcategory (RNA class) for ZNF84-DT Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ZNF84-DT Gene

  • ZNF84 Divergent Transcript 2 3 5
  • ZNF84-DT 2 5
  • NONHSAG012843.2 91
  • Lnc-ZNF891-2 165

External Ids for ZNF84-DT Gene

Summaries for ZNF84-DT Gene

GeneCards Summary for ZNF84-DT Gene

ZNF84-DT (ZNF84 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ZNF84-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ZNF84-DT Gene

Genomics for ZNF84-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ZNF84-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J133036 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 -0.6 -579 3.6 CREB1 GATAD2A ZNF629 TFE3 ZNF512 RFX1 SIX5 NFKBIZ KDM1A ZNF692 ZNF84 ZNF84-DT ZNF140 ZNF891 ZNF268 GOLGA3 ZNF26 EP400P1 NOC4L ZNF10
GH12J132954 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 12 +81.1 81057 3.3 SP1 SIX5 KDM1A ZNF143 RELA RBFOX2 POLR2A PATZ1 NR2C1 IRF2 CHFR ZNF605 lnc-CHFR-2 lnc-ZNF26-5 ZNF84 ZNF268 ZNF140 ZNF10 ZNF891 ENSG00000250790
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ZNF84-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ZNF84-DT Gene

Genomic Locations for ZNF84-DT Gene
chr12:133,029,485-133,037,222
(GRCh38/hg38)
Size:
7,738 bases
Orientation:
Minus strand
chr12:133,606,975-133,613,808
(GRCh37/hg19)
Size:
6,834 bases
Orientation:
Minus strand

Genomic View for ZNF84-DT Gene

Genes around ZNF84-DT on UCSC Golden Path with GeneCards custom track
ZNF84-DT in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ZNF84-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF84-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF84-DT Gene

Proteins for ZNF84-DT Gene

Post-translational modifications for ZNF84-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZNF84-DT Gene

Domains & Families for ZNF84-DT Gene

Gene Families for ZNF84-DT Gene

genes like me logo Genes that share domains with ZNF84-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ZNF84-DT Gene

Function for ZNF84-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNF84-DT Gene

Localization for ZNF84-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZNF84-DT Gene

Pathways & Interactions for ZNF84-DT Gene

PathCards logo

SuperPathways for ZNF84-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for ZNF84-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ZNF84-DT Gene

Drugs & Compounds for ZNF84-DT Gene

No Compound Related Data Available

Transcripts for ZNF84-DT Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ZNF84-DT Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000125292_9606 lncRNA 1151 5

HGNC: 53355,

RefSeq: NR_110091,

Ensembl: ENST00000443154 (view in UCSC) ,

LNCipedia: lnc-ZNF891-2:2, lnc-ZNF891-2:5,

NONCODE: NONHSAT032164.2,

URS000040D27A_9606 lncRNA 504 3

Ensembl: ENST00000592296 (view in UCSC) ,

LNCipedia: lnc-ZNF891-2:6,

NONCODE: NONHSAT032163.2,

URS0000D5D9F3_9606 lncRNA 1801 1

LNCipedia: lnc-ZNF891-2:3,

URS00008BF12F_9606 lncRNA 1793 1

LNCipedia: lnc-ZNF891-2:1,

URS0000D58D51_9606 lncRNA 815 1

LNCipedia: lnc-ZNF891-2:4,

ZNF84-DT in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ZNF84-DT Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF84-DT Gene

No ASD Table

Relevant External Links for ZNF84-DT Gene

GeneLoc Exon Structure for
ZNF84-DT

Expression for ZNF84-DT Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ZNF84-DT

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF84-DT Gene

Orthologs for ZNF84-DT Gene

Evolution for ZNF84-DT Gene

ENSEMBL:
Gene Tree for ZNF84-DT (if available)
TreeFam:
Gene Tree for ZNF84-DT (if available)

No data available for Orthologs for ZNF84-DT Gene

Paralogs for ZNF84-DT Gene

No data available for Paralogs for ZNF84-DT Gene

Variants for ZNF84-DT Gene

Additional dbSNP identifiers (rs#s) for ZNF84-DT Gene

Structural Variations from Database of Genomic Variants (DGV) for ZNF84-DT Gene

Variant ID Type Subtype PubMed ID
dgv1590n100 CNV gain 25217958
dgv1592n100 CNV gain 25217958
dgv330e199 CNV deletion 23128226
dgv917n106 CNV deletion 24896259
esv2759923 CNV loss 17122850
nsv1054933 CNV gain 25217958
nsv1071081 CNV deletion 25765185
nsv525745 CNV gain 19592680
nsv9048 CNV gain 18304495

Additional Variant Information for ZNF84-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF84-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for ZNF84-DT Gene

Disorders for ZNF84-DT Gene

No disorders were found for ZNF84-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ZNF84-DT Gene

Publications for ZNF84-DT Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for ZNF84-DT Gene

Products for ZNF84-DT Gene

Sources for ZNF84-DT Gene