Aliases for ZNF790-AS1 Gene

Subcategory (RNA class) for ZNF790-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ZNF790-AS1 Gene

  • ZNF790 Antisense RNA 1 2 3 5
  • ZNF790 Antisense RNA 1 (Non-Protein Coding) 2 3
  • ZNF790-AS1 2 5
  • NONHSAG025668.2 91
  • CTD-2162K18.5 3
  • HSALNG0125793 164
  • Lnc-ZNF345-29 165

External Ids for ZNF790-AS1 Gene

Previous GeneCards Identifiers for ZNF790-AS1 Gene

  • GC19P037291
  • GC19P036798
  • GC19P037080
  • GC19P037249
  • GC19P037321
  • GC19P037754
  • GC19P036800
  • GC19P036931

Summaries for ZNF790-AS1 Gene

GeneCards Summary for ZNF790-AS1 Gene

ZNF790-AS1 (ZNF790 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ZNF790-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ZNF790-AS1 Gene

Genomics for ZNF790-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ZNF790-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ZNF790-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ZNF790-AS1 Gene

Genomic Locations for ZNF790-AS1 Gene
chr19:36,797,421-36,837,593
(GRCh38/hg38)
Size:
40,173 bases
Orientation:
Plus strand
chr19:37,288,420-37,319,017
(GRCh37/hg19)
Size:
30,598 bases
Orientation:
Plus strand

Genomic View for ZNF790-AS1 Gene

Genes around ZNF790-AS1 on UCSC Golden Path with GeneCards custom track
ZNF790-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ZNF790-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF790-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF790-AS1 Gene

Proteins for ZNF790-AS1 Gene

Post-translational modifications for ZNF790-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZNF790-AS1 Gene

Domains & Families for ZNF790-AS1 Gene

Gene Families for ZNF790-AS1 Gene

genes like me logo Genes that share domains with ZNF790-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ZNF790-AS1 Gene

Function for ZNF790-AS1 Gene

Phenotypes From GWAS Catalog for ZNF790-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNF790-AS1 Gene

Localization for ZNF790-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZNF790-AS1 Gene

Pathways & Interactions for ZNF790-AS1 Gene

PathCards logo

SuperPathways for ZNF790-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ZNF790-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ZNF790-AS1 Gene

Drugs & Compounds for ZNF790-AS1 Gene

No Compound Related Data Available

Transcripts for ZNF790-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ZNF790-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000141CC4_9606 lncRNA 653 4

Ensembl: ENST00000587278 (view in UCSC) ,

LncBook: HSALNT0259325,

LNCipedia: lnc-ZNF345-29:12,

NONCODE: NONHSAT066051.2,

URS000075AC4E_9606 lncRNA 1054 2

HGNC: 27617,

RefSeq: NR_040027,

URS0000603D81_9606 lncRNA 850 2

Ensembl: ENST00000588906 (view in UCSC) ,

LncBook: HSALNT0259322,

URS0000EF65B6_9606 lncRNA 3024 1

Ensembl: ENST00000657461 (view in UCSC) ,

URS0000EF268D_9606 lncRNA 2970 1

Ensembl: ENST00000589556 (view in UCSC) ,

ZNF790-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ZNF790-AS1 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF790-AS1 Gene

No ASD Table

Relevant External Links for ZNF790-AS1 Gene

GeneLoc Exon Structure for
ZNF790-AS1

Expression for ZNF790-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ZNF790-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ZNF790-AS1

SOURCE GeneReport for Unigene cluster for ZNF790-AS1 Gene:

Hs.570010
genes like me logo Genes that share expression patterns with ZNF790-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF790-AS1 Gene

Orthologs for ZNF790-AS1 Gene

Evolution for ZNF790-AS1 Gene

ENSEMBL:
Gene Tree for ZNF790-AS1 (if available)
TreeFam:
Gene Tree for ZNF790-AS1 (if available)

No data available for Orthologs for ZNF790-AS1 Gene

Paralogs for ZNF790-AS1 Gene

No data available for Paralogs for ZNF790-AS1 Gene

Variants for ZNF790-AS1 Gene

Additional dbSNP identifiers (rs#s) for ZNF790-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for ZNF790-AS1 Gene

Variant ID Type Subtype PubMed ID
esv34384 CNV loss 17911159
esv3644270 CNV loss 21293372
nsv1064851 CNV loss 25217958
nsv469794 CNV loss 16826518
nsv521605 CNV loss 19592680
nsv817833 CNV loss 17921354
nsv963042 CNV duplication 23825009
nsv978810 CNV duplication 23825009

Additional Variant Information for ZNF790-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF790-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for ZNF790-AS1 Gene

Disorders for ZNF790-AS1 Gene

No disorders were found for ZNF790-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF790-AS1 Gene

Publications for ZNF790-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for ZNF790-AS1 Gene

Sources for ZNF790-AS1 Gene