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Aliases for ZNF790-AS1 Gene

Subcategory (RNA class) for ZNF790-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ZNF790-AS1 Gene

  • ZNF790 Antisense RNA 1 2 3 5
  • ZNF790 Antisense RNA 1 (Non-Protein Coding) 2 3
  • CTD-2162K18.5 3

External Ids for ZNF790-AS1 Gene

Previous GeneCards Identifiers for ZNF790-AS1 Gene

  • GC19P037291

Summaries for ZNF790-AS1 Gene

GeneCards Summary for ZNF790-AS1 Gene

ZNF790-AS1 (ZNF790 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ZNF790-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF790-AS1 Gene

Genomics for ZNF790-AS1 Gene

GeneHancer (GH) Regulatory Elements for ZNF790-AS1 Gene

Promoters and enhancers for ZNF790-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I036796 Promoter/Enhancer 1.5 Ensembl ENCODE 572.3 0.0 -29 1.8 PKNOX1 SIN3A ZNF2 YY1 ZNF213 ZNF302 ZNF416 ZNF143 ZNF548 FOS ZNF790-AS1 GC19P036799 ZNF567 ZNF383 ZNF345 ZNF850 ZNF527 ZNF571 ZNF829 ZNF585B
GH19I037593 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 142 +797.2 797183 2.2 PKNOX1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 IRF4 YY1 SLC30A9 ZNF213 ZNF571 ZNF540 ZNF567 ZNF527 ZFP30 ZNF383 HKR1 ZNF345 ZNF585A ZNF607
GH19I037370 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 128.7 +573.5 573522 1.9 HDGF PKNOX1 SMAD1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 ZNF213 ZNF527 ZNF567 ZNF383 ZNF345 ZFP30 ZNF571 HKR1 ZNF850 ZNF793 ZNF790
GH19I037653 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 124.9 +857.8 857782 3 MLX ZFP64 FEZF1 DMAP1 YY1 ZNF213 ZNF416 ZNF143 ZNF548 SP3 ZFP30 ZNF527 ZNF567 ZNF383 ZNF345 ZNF571 ZNF790 HKR1 ZNF850 ZNF585A
GH19I036915 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 101.9 +119.0 118977 2.2 PKNOX1 ARID4B SIN3A ZNF2 YY1 ZNF302 ZNF416 ZNF143 ZNF548 SP3 ZNF568 ZNF829 GC19M038851 ZNF527 ZNF567 ZNF345 ZNF383 ZFP30 ZNF571 ZNF850
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ZNF790-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ZNF790-AS1 Gene

Genomic Locations for ZNF790-AS1 Gene
chr19:36,797,518-36,828,115
(GRCh38/hg38)
Size:
30,598 bases
Orientation:
Plus strand
chr19:37,288,420-37,319,017
(GRCh37/hg19)

Genomic View for ZNF790-AS1 Gene

Genes around ZNF790-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF790-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF790-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF790-AS1 Gene

Proteins for ZNF790-AS1 Gene

Post-translational modifications for ZNF790-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZNF790-AS1 Gene

Domains & Families for ZNF790-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZNF790-AS1 Gene

Function for ZNF790-AS1 Gene

Phenotypes From GWAS Catalog for ZNF790-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNF790-AS1 Gene

Localization for ZNF790-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZNF790-AS1 Gene

Pathways & Interactions for ZNF790-AS1 Gene

SuperPathways for ZNF790-AS1 Gene

No Data Available

Interacting Proteins for ZNF790-AS1 Gene

Gene Ontology (GO) - Biological Process for ZNF790-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZNF790-AS1 Gene

Drugs & Compounds for ZNF790-AS1 Gene

No Compound Related Data Available

Transcripts for ZNF790-AS1 Gene

mRNA/cDNA for ZNF790-AS1 Gene

(3) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZNF790-AS1 Gene

ZNF790 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF790-AS1 Gene

No ASD Table

Relevant External Links for ZNF790-AS1 Gene

GeneLoc Exon Structure for
ZNF790-AS1
ECgene alternative splicing isoforms for
ZNF790-AS1

Expression for ZNF790-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZNF790-AS1 Gene

SOURCE GeneReport for Unigene cluster for ZNF790-AS1 Gene:

Hs.570010
genes like me logo Genes that share expression patterns with ZNF790-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF790-AS1 Gene

Orthologs for ZNF790-AS1 Gene

Evolution for ZNF790-AS1 Gene

ENSEMBL:
Gene Tree for ZNF790-AS1 (if available)
TreeFam:
Gene Tree for ZNF790-AS1 (if available)

No data available for Orthologs for ZNF790-AS1 Gene

Paralogs for ZNF790-AS1 Gene

No data available for Paralogs for ZNF790-AS1 Gene

Variants for ZNF790-AS1 Gene

Sequence variations from dbSNP and Humsavar for ZNF790-AS1 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000018264 -- 36,817,730(+) A/G intron_variant
rs1000086731 -- 36,810,754(+) A/T intron_variant
rs1000145480 -- 36,815,385(+) G/A intron_variant
rs1000315467 -- 36,817,333(+) A/G intron_variant
rs1000356178 -- 36,827,246(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ZNF790-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv978810 CNV duplication 23825009
nsv963042 CNV duplication 23825009
nsv817833 CNV loss 17921354
nsv521605 CNV loss 19592680
nsv469794 CNV loss 16826518
nsv1064851 CNV loss 25217958
esv3644270 CNV loss 21293372
esv34384 CNV loss 17911159

Additional Variant Information for ZNF790-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF790-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ZNF790-AS1 Gene

Disorders for ZNF790-AS1 Gene

Additional Disease Information for ZNF790-AS1

No disorders were found for ZNF790-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF790-AS1 Gene

Publications for ZNF790-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for ZNF790-AS1 Gene

Sources for ZNF790-AS1 Gene

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