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Aliases for ZNF788P Gene

Aliases for ZNF788P Gene

  • Zinc Finger Family Member 788, Pseudogene 2 3 4 5
  • Putative KRAB Domain-Containing Protein ZNF788 3 4
  • Zinc Finger Family Member 788 2 3
  • ZNF788 3 4
  • KRAB Domain-Containing Protein ZNF788 3
  • Zinc Finger Protein 788 3

External Ids for ZNF788P Gene

Previous HGNC Symbols for ZNF788P Gene

  • ZNF788

Previous GeneCards Identifiers for ZNF788P Gene

  • GC19P012205
  • GC19P012189
  • GC19P012197

Summaries for ZNF788P Gene

GeneCards Summary for ZNF788P Gene

ZNF788P (Zinc Finger Family Member 788, Pseudogene) is a Pseudogene.

Additional gene information for ZNF788P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF788P Gene

Genomics for ZNF788P Gene

GeneHancer (GH) Regulatory Elements for ZNF788P Gene

Promoters and enhancers for ZNF788P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J012091 Promoter/Enhancer 1.3 Ensembl ENCODE 600.7 +0.3 326 2.4 SP1 ZFX POLR2A ZNF384 REST CTCF PKNOX1 HDAC1 GABPA MGA ZNF788P ZNF433 ZNF20 RSL24D1P8 ENSG00000286132
GH19J012090 Enhancer 0.6 ENCODE 600.7 -1.2 -1242 0.2 CTCF ZNF644 RAD21 ZNF143 REST ZNF654 EBF1 XRCC5 ZNF788P ZNF433 ENSG00000199444 GC19M012091 ENSG00000286132
GH19J012936 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 42.2 +846.9 846869 5.8 MTA3 ZNF652 SP1 CC2D1A ZFX MNT CBFA2T2 NKRF POLR2A MLLT1 CALR MIR6515 ZNF625 ZNF136 TRMT1 RPS6P25 ZNF844 ZNF442 ZNF788P CCDC130
GH19J012781 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 36.3 +697.0 697035 16 MTA3 ZNF652 SP1 ZFX CC2D1A ELF3 CTCF MNT SIX5 CBFA2T2 IER2 CCDC130 ZNF136 ZNF44 ZNF791 ZNF564 TRMT1 WDR83OS ZNF442 MRI1
GH19J012983 Enhancer 1.6 FANTOM5 ENCODE dbSUPER 53.2 +892.5 892539 3.2 ZNF473 CC2D1A CTCF ELF3 ZKSCAN8 MNT CBFA2T2 ZNF148 MLLT1 CEBPG ZNF136 ZNF625 ZNF442 CCDC130 ZNF564 ZNF799 ZNF844 WDR83OS ZNF709 ZNF788P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ZNF788P on UCSC Golden Path with GeneCards custom track

Genomic Locations for ZNF788P Gene

Genomic Locations for ZNF788P Gene
chr19:12,092,263-12,137,235
(GRCh38/hg38)
Size:
44,973 bases
Orientation:
Plus strand
chr19:12,203,078-12,248,050
(GRCh37/hg19)
Size:
44,973 bases
Orientation:
Plus strand

Genomic View for ZNF788P Gene

Genes around ZNF788P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF788P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF788P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF788P Gene

Proteins for ZNF788P Gene

  • Protein details for ZNF788P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZQV5-ZN788_HUMAN
    Recommended name:
    Putative KRAB domain-containing protein ZNF788
    Protein Accession:
    Q6ZQV5
    Secondary Accessions:
    • A0A0A0MSK0
    • M0R3I2
    • Q6ZRE4

    Protein attributes for ZNF788P Gene

    Size:
    82 amino acids
    Molecular mass:
    9552 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAC87366.1; Type=Erroneous translation; Note=Wrong choice of CDS.; Evidence={ECO:0000305}; Sequence=BAC87578.1; Type=Erroneous translation; Note=Wrong choice of CDS.; Evidence={ECO:0000305};

    Alternative splice isoforms for ZNF788P Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZNF788P Gene

Post-translational modifications for ZNF788P Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZNF788P Gene

No data available for DME Specific Peptides for ZNF788P Gene

Domains & Families for ZNF788P Gene

Gene Families for ZNF788P Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for ZNF788P Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for ZNF788P Gene

GenScript: Design optimal peptide antigens:
  • Zinc finger protein 788 (ZN788_HUMAN)

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ZNF788P: view

No data available for UniProtKB/Swiss-Prot for ZNF788P Gene

Function for ZNF788P Gene

Phenotypes From GWAS Catalog for ZNF788P Gene

Gene Ontology (GO) - Molecular Function for ZNF788P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific ISA --
GO:0003676 nucleic acid binding IEA --
genes like me logo Genes that share ontologies with ZNF788P: view
genes like me logo Genes that share phenotypes with ZNF788P: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNF788P Gene

Localization for ZNF788P Gene

Gene Ontology (GO) - Cellular Components for ZNF788P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus HDA 16791210
genes like me logo Genes that share ontologies with ZNF788P: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for ZNF788P Gene

Pathways & Interactions for ZNF788P Gene

PathCards logo

SuperPathways for ZNF788P Gene

No Data Available

Interacting Proteins for ZNF788P Gene

Gene Ontology (GO) - Biological Process for ZNF788P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006357 regulation of transcription by RNA polymerase II IEA --
genes like me logo Genes that share ontologies with ZNF788P: view

No data available for Pathways by source and SIGNOR curated interactions for ZNF788P Gene

Drugs & Compounds for ZNF788P Gene

No Compound Related Data Available

Transcripts for ZNF788P Gene

mRNA/cDNA for ZNF788P Gene

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF788P Gene

No ASD Table

Relevant External Links for ZNF788P Gene

GeneLoc Exon Structure for
ZNF788P
ECgene alternative splicing isoforms for
ZNF788P

Expression for ZNF788P Gene

NURSA nuclear receptor signaling pathways regulating expression of ZNF788P Gene:

ZNF788P

Evidence on tissue expression from TISSUES for ZNF788P Gene

  • Heart(2.5)
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF788P Gene

Orthologs for ZNF788P Gene

This gene was present in the common ancestor of chordates.

Orthologs for ZNF788P Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Gm14308 35
  • 6 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 6 (a)
ManyToMany
-- 35
  • 6 (a)
ManyToMany
-- 35
  • 5 (a)
ManyToMany
-- 35
  • 5 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 2 (a)
OneToMany
chimpanzee
(Pan troglodytes)
Mammalia -- 35
  • 1 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 2 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii CT573234.2 35
  • 2 (a)
ManyToMany
CR388132.2 35
  • 2 (a)
ManyToMany
Species where no ortholog for ZNF788P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ZNF788P Gene

ENSEMBL:
Gene Tree for ZNF788P (if available)
TreeFam:
Gene Tree for ZNF788P (if available)
Aminode:
Evolutionary constrained regions (ECRs) for ZNF788P: view image

Paralogs for ZNF788P Gene

No data available for Paralogs for ZNF788P Gene

Variants for ZNF788P Gene

Sequence variations from dbSNP and Humsavar for ZNF788P Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000117960 -- 12,100,230(+) A/G intron_variant
rs1000466867 -- 12,114,405(+) T/A 3_prime_UTR_variant, genic_downstream_transcript_variant
rs1000503675 -- 12,099,280(+) A/C intron_variant
rs1000661826 -- 12,092,291(+) A/G 5_prime_UTR_variant, genic_upstream_transcript_variant, upstream_transcript_variant
rs1000673783 -- 12,092,807(+) C/T genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ZNF788P Gene

Variant ID Type Subtype PubMed ID
esv3643694 CNV loss 21293372
esv3893164 CNV loss 25118596
nsv525966 CNV gain 19592680
nsv578619 CNV loss 21841781
nsv833753 CNV loss 17160897
nsv961177 CNV duplication 23825009

Variation tolerance for ZNF788P Gene

Gene Damage Index Score: 7.99; 84.11% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for ZNF788P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF788P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF788P Gene

Disorders for ZNF788P Gene

No disorders were found for ZNF788P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF788P Gene

Publications for ZNF788P Gene

  1. Common genetic variation and performance on standardized cognitive tests. (PMID: 20125193) Cirulli ET … Goldstein DB (European journal of human genetics : EJHG 2010) 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Dynamic proteomics in individual human cells uncovers widespread cell-cycle dependence of nuclear proteins. (PMID: 16791210) Sigal A … Alon U (Nature methods 2006) 3 58
  4. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh JH … Kim NS (Mammalian genome : official journal of the International Mammalian Genome Society 2005) 3 58
  5. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3 58

Products for ZNF788P Gene

Sources for ZNF788P Gene

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