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Aliases for ZNF788P Gene

Aliases for ZNF788P Gene

  • Zinc Finger Family Member 788, Pseudogene 2 3
  • Zinc Finger Family Member 788 2 3
  • KRAB Domain-Containing Protein ZNF788 3
  • Zinc Finger Protein 788 3
  • ZNF788 3

External Ids for ZNF788P Gene

Previous HGNC Symbols for ZNF788P Gene

  • ZNF788

Summaries for ZNF788P Gene

GeneCards Summary for ZNF788P Gene

ZNF788P (Zinc Finger Family Member 788, Pseudogene) is a Pseudogene.

Additional gene information for ZNF788P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF788P Gene

Genomics for ZNF788P Gene

GeneHancer (GH) Regulatory Elements for ZNF788P Gene

Promoters and enhancers for ZNF788P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J012091 Promoter/Enhancer 1.3 Ensembl ENCODE 650.7 +0.1 126 2 HDAC1 PKNOX1 ARID4B ZBTB40 POLR2B ATF7 SMAD5 GTF2B NFYC REST ZNF788P TRIR ZNF20 PRKCSH ZNF700 WDR83OS ZNF136 ZNF799 ZNF564 ZNF433
GH19J012090 Enhancer 0.8 Ensembl ENCODE 650.7 -1.2 -1189 0.3 CTCF ZNF654 REST EBF1 ZNF644 RAD21 XRCC5 ZNF143 ZNF788P ZNF433 ENSG00000199444 GC19M012091
GH19J012064 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE 31.3 -27.3 -27314 1.8 HDAC1 PKNOX1 ARID4B SIN3A RARA YY1 ETS1 POLR2B BCLAF1 SMAD5 ZNF844 ZNF788P TRIR PRKCSH ZNF700 WDR83OS ZNF136 ZNF799 ZNF564 ZNF20
GH19J012293 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 13.4 +202.3 202254 2.9 PKNOX1 MLX ARID4B SIN3A YY1 POLR2B ZNF766 CBX5 ZNF143 FOS ZNF44 ZNF136 ZNF20 ZNF700 ZNF763 ZNF564 ZNF878 TRMT1 TRIR ZNF627
GH19J011924 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 14.3 -166.8 -166845 3.4 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 YY1 POLR2B ZNF213 ZNF700 ENSG00000267179 ZNF136 ZNF763 ZNF44 ZNF20 ZNF627 ZNF564 TRIR ZNF799
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ZNF788P on UCSC Golden Path with GeneCards custom track

Genomic Locations for ZNF788P Gene

Genomic Locations for ZNF788P Gene
chr19:12,092,263-12,114,678
(GRCh38/hg38)
Size:
22,416 bases
Orientation:
Plus strand
chr19:12,203,078-12,248,050
(GRCh37/hg19)
Size:
44,973 bases
Orientation:
Plus strand

Genomic View for ZNF788P Gene

Genes around ZNF788P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF788P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF788P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF788P Gene

Proteins for ZNF788P Gene

  • Protein details for ZNF788P Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    H7BYR5-H7BYR5_HUMAN
    Recommended name:
    Zinc finger family member 788, pseudogene
    Protein Accession:
    H7BYR5

    Protein attributes for ZNF788P Gene

    Size:
    259 amino acids
    Molecular mass:
    29961 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ZNF788P Gene

Post-translational modifications for ZNF788P Gene

No Post-translational modifications

Other Protein References for ZNF788P Gene

No data available for DME Specific Peptides for ZNF788P Gene

Domains & Families for ZNF788P Gene

Gene Families for ZNF788P Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for ZNF788P Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for ZNF788P Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ZNF788P: view

No data available for UniProtKB/Swiss-Prot for ZNF788P Gene

Function for ZNF788P Gene

Phenotypes From GWAS Catalog for ZNF788P Gene

Gene Ontology (GO) - Molecular Function for ZNF788P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding ISA --
GO:0003676 nucleic acid binding IEA --
genes like me logo Genes that share ontologies with ZNF788P: view
genes like me logo Genes that share phenotypes with ZNF788P: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNF788P Gene

Localization for ZNF788P Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ZNF788P gene
Compartment Confidence
nucleus 5
cytosol 2
extracellular 1

Gene Ontology (GO) - Cellular Components for ZNF788P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus HDA 16791210
genes like me logo Genes that share ontologies with ZNF788P: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for ZNF788P Gene

Pathways & Interactions for ZNF788P Gene

SuperPathways for ZNF788P Gene

No Data Available

Interacting Proteins for ZNF788P Gene

Gene Ontology (GO) - Biological Process for ZNF788P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006357 regulation of transcription by RNA polymerase II IEA --
genes like me logo Genes that share ontologies with ZNF788P: view

No data available for Pathways by source and SIGNOR curated interactions for ZNF788P Gene

Drugs & Compounds for ZNF788P Gene

No Compound Related Data Available

Transcripts for ZNF788P Gene

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF788P Gene

No ASD Table

Relevant External Links for ZNF788P Gene

GeneLoc Exon Structure for
ZNF788P
ECgene alternative splicing isoforms for
ZNF788P

Expression for ZNF788P Gene

NURSA nuclear receptor signaling pathways regulating expression of ZNF788P Gene:

ZNF788P

Evidence on tissue expression from TISSUES for ZNF788P Gene

  • Heart(2.5)
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF788P Gene

Orthologs for ZNF788P Gene

No data available for Orthologs and Evolution for ZNF788P Gene

Paralogs for ZNF788P Gene

No data available for Paralogs for ZNF788P Gene

Variants for ZNF788P Gene

Sequence variations from dbSNP and Humsavar for ZNF788P Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000117960 -- 12,100,230(+) A/G intron_variant
rs1000466867 -- 12,114,405(+) T/A non_coding_transcript_variant
rs1000503675 -- 12,099,280(+) A/C intron_variant
rs1000661826 -- 12,092,291(+) A/G non_coding_transcript_variant
rs1000673783 -- 12,092,807(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ZNF788P Gene

Variant ID Type Subtype PubMed ID
esv3643694 CNV loss 21293372
esv3893164 CNV loss 25118596
nsv525966 CNV gain 19592680
nsv578619 CNV loss 21841781
nsv833753 CNV loss 17160897
nsv961177 CNV duplication 23825009

Variation tolerance for ZNF788P Gene

Gene Damage Index Score: 7.99; 84.11% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for ZNF788P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF788P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF788P Gene

Disorders for ZNF788P Gene

Additional Disease Information for ZNF788P

No disorders were found for ZNF788P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF788P Gene

Publications for ZNF788P Gene

  1. Common genetic variation and performance on standardized cognitive tests. (PMID: 20125193) Cirulli ET … Goldstein DB (European journal of human genetics : EJHG 2010) 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Dynamic proteomics in individual human cells uncovers widespread cell-cycle dependence of nuclear proteins. (PMID: 16791210) Sigal A … Alon U (Nature methods 2006) 3 58
  4. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh JH … Kim NS (Mammalian genome : official journal of the International Mammalian Genome Society 2005) 3 58
  5. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3 58

Products for ZNF788P Gene

Sources for ZNF788P Gene

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