Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ZNF788 Gene

Aliases for ZNF788 Gene

  • Zinc Finger Family Member 788 2 3 5

External Ids for ZNF788 Gene

Previous GeneCards Identifiers for ZNF788 Gene

  • GC19P012075
  • GC19P012076
  • GC19P012077
  • GC19P012084
  • GC19P012087
  • GC19P012089
  • GC19P012095
  • GC19P012097
  • GC19P012204
  • GC19P011778
  • GC19P012113
  • GC19P012120
  • GC19P012128
  • GC19P012135
  • GC19P012142
  • GC19P012150
  • GC19P012158

Summaries for ZNF788 Gene

GeneCards Summary for ZNF788 Gene

ZNF788 (Zinc Finger Family Member 788) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include nucleic acid binding.

UniProtKB/Swiss-Prot for ZNF788 Gene

  • May be involved in transcriptional regulation.

Additional gene information for ZNF788 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF788 Gene

Genomics for ZNF788 Gene

GeneHancer (GH) Regulatory Elements for ZNF788 Gene

Promoters and enhancers for ZNF788 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I012091 Promoter/Enhancer 1.3 Ensembl ENCODE 550.8 +0.1 126 2 HDAC1 PKNOX1 ARID4B ZBTB40 POLR2B ATF7 SMAD5 GTF2B NFYC REST ZNF788 TRIR ZNF20 PRKCSH ZNF700 WDR83OS ZNF136 ZNF799 ZNF564 ZNF433
GH19I012090 Enhancer 0.7 Ensembl ENCODE 550.8 -1.2 -1189 0.3 CTCF ZNF654 ZNF143 REST EBF1 ZNF644 RAD21 ZNF788 ZNF433 ENSG00000199444 GC19M012091
GH19I012983 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 62.1 +892.5 892539 3.2 HDGF PKNOX1 CLOCK FOXA2 MLX ARID4B SIN3A DMAP1 ZNF2 ZNF766 ZNF136 ZNF625 ZNF442 ZNF844 CCDC130 ZNF564 ZNF799 WDR83OS ZNF788 ZNF709
GH19I012936 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 31.1 +846.9 846869 5.8 HDGF PKNOX1 CLOCK FOXA2 SMAD1 ARNT ARID4B NEUROD1 SIN3A DMAP1 CALR MIR6515 ZNF136 CCDC130 TRMT1 ZNF625 RPS6P25 ZNF44 ZNF844 ZNF564
GH19I013011 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 27.6 +927.9 927932 17.2 HDGF FOXA2 MLX ARNT ARID4B FEZF1 DMAP1 ZNF2 YY1 ZNF213 NFIX ZNF136 ZNF709 ZNF791 TRMT1 CCDC130 MRI1 ZNF44 ZNF564 ZNF625
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ZNF788 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the ZNF788 gene promoter:

Genomic Locations for ZNF788 Gene

Genomic Locations for ZNF788 Gene
chr19:12,092,263-12,137,235
(GRCh38/hg38)
Size:
44,973 bases
Orientation:
Plus strand
chr19:12,203,078-12,248,050
(GRCh37/hg19)

Genomic View for ZNF788 Gene

Genes around ZNF788 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF788 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF788 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF788 Gene

Proteins for ZNF788 Gene

  • Protein details for ZNF788 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZQV5-ZN788_HUMAN
    Recommended name:
    Zinc finger protein 788
    Protein Accession:
    Q6ZQV5
    Secondary Accessions:
    • Q6ZRE4

    Protein attributes for ZNF788 Gene

    Size:
    615 amino acids
    Molecular mass:
    71992 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAC87366.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for ZNF788 Gene

Post-translational modifications for ZNF788 Gene

No Post-translational modifications

Other Protein References for ZNF788 Gene

No data available for DME Specific Peptides for ZNF788 Gene

Domains & Families for ZNF788 Gene

Gene Families for ZNF788 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for ZNF788 Gene

Suggested Antigen Peptide Sequences for ZNF788 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q6ZQV5

UniProtKB/Swiss-Prot:

ZN788_HUMAN :
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
genes like me logo Genes that share domains with ZNF788: view

Function for ZNF788 Gene

Molecular function for ZNF788 Gene

UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation.

Phenotypes From GWAS Catalog for ZNF788 Gene

Gene Ontology (GO) - Molecular Function for ZNF788 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF788: view
genes like me logo Genes that share phenotypes with ZNF788: view

Animal Model Products

Inhibitory RNA Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ZNF788 Gene

Localization for ZNF788 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF788 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ZNF788 gene
Compartment Confidence
nucleus 5
cytosol 2
extracellular 1

Gene Ontology (GO) - Cellular Components for ZNF788 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
GO:0005634 nucleus HDA 16791210
genes like me logo Genes that share ontologies with ZNF788: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for ZNF788 Gene

Pathways & Interactions for ZNF788 Gene

SuperPathways for ZNF788 Gene

No Data Available

Interacting Proteins for ZNF788 Gene

Gene Ontology (GO) - Biological Process for ZNF788 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZNF788: view

No data available for Pathways by source and SIGNOR curated interactions for ZNF788 Gene

Drugs & Compounds for ZNF788 Gene

No Compound Related Data Available

Transcripts for ZNF788 Gene

Unigene Clusters for ZNF788 Gene

Zinc finger family member 788:
Representative Sequences:

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF788 Gene

No ASD Table

Relevant External Links for ZNF788 Gene

GeneLoc Exon Structure for
ZNF788
ECgene alternative splicing isoforms for
ZNF788

Expression for ZNF788 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZNF788 Gene

mRNA differential expression in normal tissues according to GTEx for ZNF788 Gene

This gene is overexpressed in Brain - Cerebellum (x4.5) and Brain - Cerebellar Hemisphere (x4.3).

Protein differential expression in normal tissues from HIPED for ZNF788 Gene

This gene is overexpressed in Pancreatic juice (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for ZNF788 Gene



Protein tissue co-expression partners for ZNF788 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of ZNF788 Gene:

ZNF788

SOURCE GeneReport for Unigene cluster for ZNF788 Gene:

Hs.127473

Evidence on tissue expression from TISSUES for ZNF788 Gene

  • Heart(2.5)
genes like me logo Genes that share expression patterns with ZNF788: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF788 Gene

Orthologs for ZNF788 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ZNF788 Gene

Organism Taxonomy Gene Similarity Type Details
oppossum
(Monodelphis domestica)
Mammalia -- 34
  • 6 (a)
ManyToMany
-- 34
  • 6 (a)
ManyToMany
-- 34
  • 5 (a)
ManyToMany
-- 34
  • 5 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm14308 34
  • 6 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 2 (a)
OneToMany
chimpanzee
(Pan troglodytes)
Mammalia -- 34
  • 1 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia -- 34
  • 2 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii CR388132.2 34
  • 2 (a)
ManyToMany
CT573234.2 34
  • 2 (a)
ManyToMany
Species where no ortholog for ZNF788 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ZNF788 Gene

ENSEMBL:
Gene Tree for ZNF788 (if available)
TreeFam:
Gene Tree for ZNF788 (if available)

Paralogs for ZNF788 Gene

(441) SIMAP similar genes for ZNF788 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with ZNF788: view

No data available for Paralogs for ZNF788 Gene

Variants for ZNF788 Gene

Sequence variations from dbSNP and Humsavar for ZNF788 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000117960 -- 12,100,230(+) A/G intron_variant
rs1000466867 -- 12,114,405(+) T/A non_coding_transcript_variant
rs1000503675 -- 12,099,280(+) A/C intron_variant
rs1000661826 -- 12,092,291(+) A/G non_coding_transcript_variant
rs1000673783 -- 12,092,807(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ZNF788 Gene

Variant ID Type Subtype PubMed ID
nsv961177 CNV duplication 23825009
nsv833753 CNV loss 17160897
nsv578619 CNV loss 21841781
nsv525966 CNV gain 19592680
esv3893164 CNV loss 25118596
esv3643694 CNV loss 21293372

Variation tolerance for ZNF788 Gene

Gene Damage Index Score: 7.99; 84.11% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for ZNF788 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF788

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF788 Gene

Disorders for ZNF788 Gene

Additional Disease Information for ZNF788

No disorders were found for ZNF788 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF788 Gene

Publications for ZNF788 Gene

  1. Common genetic variation and performance on standardized cognitive tests. (PMID: 20125193) Cirulli ET … Goldstein DB (European journal of human genetics : EJHG 2010) 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Dynamic proteomics in individual human cells uncovers widespread cell-cycle dependence of nuclear proteins. (PMID: 16791210) Sigal A … Alon U (Nature methods 2006) 3 58
  4. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh JH … Kim NS (Mammalian genome : official journal of the International Mammalian Genome Society 2005) 3 58
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 4 58

Products for ZNF788 Gene

Sources for ZNF788 Gene

Content
Loading form....