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Aliases for ZNF780B Gene

Aliases for ZNF780B Gene

  • Zinc Finger Protein 780B 2 3 3 5
  • Zinc Finger Protein 779 2 3 4
  • ZNF779 3 4

External Ids for ZNF780B Gene

Previous HGNC Symbols for ZNF780B Gene

  • ZNF779

Previous GeneCards Identifiers for ZNF780B Gene

  • GC19M045232
  • GC19M040534
  • GC19M036971

Summaries for ZNF780B Gene

GeneCards Summary for ZNF780B Gene

ZNF780B (Zinc Finger Protein 780B) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include nucleic acid binding and DNA binding transcription factor activity. An important paralog of this gene is ZNF607.

UniProtKB/Swiss-Prot for ZNF780B Gene

  • May be involved in transcriptional regulation.

Additional gene information for ZNF780B Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF780B Gene

Genomics for ZNF780B Gene

GeneHancer (GH) Regulatory Elements for ZNF780B Gene

Promoters and enhancers for ZNF780B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J039397 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 109.7 +652.0 651952 20 CLOCK MLX ZFP64 FEZF1 DMAP1 YBX1 IRF4 YY1 SLC30A9 ZNF213 ZFP36 PAF1 HNRNPL FBL ZNF780B SUPT5H RN7SL566P ZNF780A ENSG00000269688 AKT2
GH19J040796 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 97.7 -743.3 -743310 11.8 CLOCK MLX ZFP64 FEZF1 DMAP1 YY1 ZNF213 ZNF416 ZNF143 SP3 EGLN2 ENSG00000268797 ZNF780B SNRPA HNRNPUL1 CCDC97 ENSG00000269843 NUMBL ZNF546 COQ8B
GH19J040347 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 105.7 -289.6 -289557 2.2 CLOCK MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 PLD3 C19orf47 ZNF780B SNRPA HNRNPUL1 ENSG00000269843 ZNF780A CYP2G1P SUPT5H NUMBL
GH19J040713 Promoter/Enhancer 2.9 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 73.3 -659.3 -659321 9.2 CLOCK FEZF1 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF416 ZNF143 ZNF548 ITPKC NUMBL COQ8B SNRPA HNRNPUL1 ENSG00000269843 CCDC97 ZNF780B FBL AKT2
GH19J040596 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 79.9 -542.7 -542669 10 CLOCK MLX FEZF1 DMAP1 YY1 ZNF213 E2F8 ZNF416 ZNF143 ZNF548 LTBP4 HNRNPUL1 SNRPA ENSG00000269843 ZNF780B CCDC97 ZNF780A AKT2 FBL COQ8B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ZNF780B on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the ZNF780B gene promoter:
  • Pax-6
  • GR-alpha
  • GR
  • SRF (504 AA)
  • SRF
  • Ik-2
  • ZID
  • IRF-7A
  • YY1
  • SREBP-1c

Genomic Locations for ZNF780B Gene

Genomic Locations for ZNF780B Gene
chr19:40,028,260-40,059,027
(GRCh38/hg38)
Size:
30,768 bases
Orientation:
Minus strand
chr19:40,534,167-40,562,116
(GRCh37/hg19)
Size:
27,950 bases
Orientation:
Minus strand

Genomic View for ZNF780B Gene

Genes around ZNF780B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF780B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF780B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF780B Gene

Proteins for ZNF780B Gene

  • Protein details for ZNF780B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y6R6-Z780B_HUMAN
    Recommended name:
    Zinc finger protein 780B
    Protein Accession:
    Q9Y6R6
    Secondary Accessions:
    • B9EH00

    Protein attributes for ZNF780B Gene

    Size:
    833 amino acids
    Molecular mass:
    96807 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ZNF780B Gene

Post-translational modifications for ZNF780B Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ZNF780B Gene

Domains & Families for ZNF780B Gene

Gene Families for ZNF780B Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Transcription factors

Protein Domains for ZNF780B Gene

Suggested Antigen Peptide Sequences for ZNF780B Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9Y6R6

UniProtKB/Swiss-Prot:

Z780B_HUMAN :
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
genes like me logo Genes that share domains with ZNF780B: view

Function for ZNF780B Gene

Molecular function for ZNF780B Gene

UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation.

Phenotypes From GWAS Catalog for ZNF780B Gene

Gene Ontology (GO) - Molecular Function for ZNF780B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0003700 DNA binding transcription factor activity IBA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF780B: view
genes like me logo Genes that share phenotypes with ZNF780B: view

Animal Model Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ZNF780B Gene

Localization for ZNF780B Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF780B Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ZNF780B gene
Compartment Confidence
nucleus 5
cytosol 2

Subcellular locations from the

Human Protein Atlas (HPA)
  • Centrosome (2)
  • Nucleus (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for ZNF780B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZNF780B: view

Pathways & Interactions for ZNF780B Gene

SuperPathways for ZNF780B Gene

No Data Available

Gene Ontology (GO) - Biological Process for ZNF780B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IBA --
genes like me logo Genes that share ontologies with ZNF780B: view

No data available for Pathways by source and SIGNOR curated interactions for ZNF780B Gene

Drugs & Compounds for ZNF780B Gene

No Compound Related Data Available

Transcripts for ZNF780B Gene

mRNA/cDNA for ZNF780B Gene

Unigene Clusters for ZNF780B Gene

Zinc finger protein 780B:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF780B Gene

No ASD Table

Relevant External Links for ZNF780B Gene

GeneLoc Exon Structure for
ZNF780B
ECgene alternative splicing isoforms for
ZNF780B

Expression for ZNF780B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZNF780B Gene

NURSA nuclear receptor signaling pathways regulating expression of ZNF780B Gene:

ZNF780B

SOURCE GeneReport for Unigene cluster for ZNF780B Gene:

Hs.101139
genes like me logo Genes that share expression patterns with ZNF780B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF780B Gene

Orthologs for ZNF780B Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZNF780B Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia LOC100684414 33
  • 78.22 (n)
ZNF780B 34
  • 53 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Zfp780b 16 34 33
  • 70.58 (n)
1700049G17Rik 34
  • 53 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Zfp780b 33
  • 68.55 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 51 (a)
OneToMany
chimpanzee
(Pan troglodytes)
Mammalia -- 34
  • 51 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia -- 34
  • 45 (a)
ManyToMany
-- 34
  • 41 (a)
ManyToMany
-- 34
  • 33 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia -- 34
  • 43 (a)
OneToMany
Species where no ortholog for ZNF780B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZNF780B Gene

ENSEMBL:
Gene Tree for ZNF780B (if available)
TreeFam:
Gene Tree for ZNF780B (if available)
Aminode:
Evolutionary constrained regions (ECRs) for ZNF780B: view image

Paralogs for ZNF780B Gene

Paralogs for ZNF780B Gene

(516) SIMAP similar genes for ZNF780B Gene using alignment to 4 proteins:

  • Z780B_HUMAN
  • C9JTJ1_HUMAN
  • M0R0W9_HUMAN
  • M0R168_HUMAN
genes like me logo Genes that share paralogs with ZNF780B: view

Variants for ZNF780B Gene

Sequence variations from dbSNP and Humsavar for ZNF780B Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000120460 -- 40,050,964(-) C/T intron_variant
rs1000187760 -- 40,049,651(-) T/C intron_variant
rs1000456325 -- 40,042,676(-) T/G intron_variant
rs1000488720 -- 40,042,475(-) T/C intron_variant
rs1000862566 -- 40,055,573(-) C/T 5_prime_UTR_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ZNF780B Gene

Variant ID Type Subtype PubMed ID
nsv2486 CNV insertion 18451855
nsv1152139 CNV duplication 26484159

Variation tolerance for ZNF780B Gene

Residual Variation Intolerance Score: 72.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.48; 64.36% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for ZNF780B Gene

Human Gene Mutation Database (HGMD)
ZNF780B
SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF780B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF780B Gene

Disorders for ZNF780B Gene

Additional Disease Information for ZNF780B

No disorders were found for ZNF780B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF780B Gene

Publications for ZNF780B Gene

  1. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J … Lucas SM (Nature 2004) 3 4 58
  2. Genome-wide association with select biomarker traits in the Framingham Heart Study. (PMID: 17903293) Benjamin EJ … Vasan RS (BMC medical genetics 2007) 44 58
  3. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S … Cupples LA (BMC medical genetics 2007) 44 58
  4. Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study. (PMID: 17903301) Vasan RS … Benjamin EJ (BMC medical genetics 2007) 44 58
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for ZNF780B Gene