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ZNF658B Gene(Pseudogene)

Zinc Finger Protein 658B (Pseudogene)

GCID:
GC09M039444
GIFtS:
24
Genes Participants
UDN Logo

Aliases for ZNF658B Gene

Aliases for ZNF658B Gene

  • Zinc Finger Protein 658B (Pseudogene) 2 3 5
  • Zinc Finger Protein 658B 2

External Ids for ZNF658B Gene

Previous GeneCards Identifiers for ZNF658B Gene

  • GC09M041508
  • GC09M041578

Summaries for ZNF658B Gene

GeneCards Summary for ZNF658B Gene

ZNF658B (Zinc Finger Protein 658B (Pseudogene)) is a Pseudogene. Among its related pathways are Gene Expression.

UniProtKB/Swiss-Prot for ZNF658B Gene

  • May be involved in transcriptional regulation.

Additional gene information for ZNF658B Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF658B Gene

Genomics for ZNF658B Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for ZNF658B Gene

Promoters and enhancers for ZNF658B Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH09I039463 Enhancer 0.2 Ensembl 0.3 +44.4 44444 1.9 PIR41194 SKP1P3 ZNF658B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ZNF658B on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the ZNF658B gene promoter:

Genomic Locations for ZNF658B Gene

Genomic Locations for ZNF658B Gene
chr9:39,443,815-39,508,885
(GRCh38/hg38)
Size:
65,071 bases
Orientation:
Minus strand
chr9:41,588,823-41,609,544
(GRCh37/hg19)

Genomic View for ZNF658B Gene

Genes around ZNF658B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF658B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF658B Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for ZNF658B Gene

Proteins for ZNF658B Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for ZNF658B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q4V348-Z658B_HUMAN
    Recommended name:
    Zinc finger protein 658B
    Protein Accession:
    Q4V348
    Secondary Accessions:
    • Q8N946

    Protein attributes for ZNF658B Gene

    Size:
    819 amino acids
    Molecular mass:
    94331 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ZNF658B Gene

Protein Expression for ZNF658B Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for ZNF658B Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ZNF658B Gene

Domains & Families for ZNF658B Gene

Protein Domains for ZNF658B Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for ZNF658B Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q4V348

UniProtKB/Swiss-Prot:

Z658B_HUMAN :
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
genes like me logo Genes that share domains with ZNF658B: view

No data available for Gene Families for ZNF658B Gene

Function for ZNF658B Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Molecular function for ZNF658B Gene

UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation.

Gene Ontology (GO) - Molecular Function for ZNF658B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF658B: view
genes like me logo Genes that share phenotypes with ZNF658B: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNF658B Gene

Localization for ZNF658B Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF658B Gene

Nucleus.

Gene Ontology (GO) - Cellular Components for ZNF658B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZNF658B: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for ZNF658B Gene

Pathways & Interactions for ZNF658B Gene

SuperPathways for ZNF658B Gene

PathCards logo More details on SuperPathways for ZNF658B
SuperPathway Contained pathways
1 Gene Expression
Gene Expression
.48
Generic Transcription Pathway
.48
genes like me logo Genes that share pathways with ZNF658B: view

Pathways by source for ZNF658B Gene

2 Reactome pathways for ZNF658B Gene

Interacting Proteins for ZNF658B Gene

Selected Interacting proteins: Q4V348-Z658B_HUMAN for ZNF658B Gene via IID MINT

Symbol External ID(s) Details
SRC

Gene Ontology (GO) - Biological Process for ZNF658B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZNF658B: view

No data available for SIGNOR curated interactions for ZNF658B Gene

Drugs & Compounds for ZNF658B Gene

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  1. Drug
No Compound Related Data Available

Transcripts for ZNF658B Gene

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  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for ZNF658B Gene

(1) REFSEQ mRNAs :
(11) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF658B Gene

No ASD Table

Relevant External Links for ZNF658B Gene

GeneLoc Exon Structure for
ZNF658B
ECgene alternative splicing isoforms for
ZNF658B

Expression for ZNF658B Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZNF658B Gene

mRNA expression in normal human tissues for ZNF658B Gene
mRNA expression by GTEx for ZNF658B Gene

Protein differential expression in normal tissues from HIPED for ZNF658B Gene

This gene is overexpressed in Pancreatic juice (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for ZNF658B Gene



Protein tissue co-expression partners for ZNF658B Gene

NURSA nuclear receptor signaling pathways regulating expression of ZNF658B Gene:

ZNF658B

SOURCE GeneReport for Unigene cluster for ZNF658B Gene:

Hs.730226
genes like me logo Genes that share expression patterns with ZNF658B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF658B Gene

Orthologs for ZNF658B Gene

Evolution for ZNF658B Gene

ENSEMBL:
Gene Tree for ZNF658B (if available)
TreeFam:
Gene Tree for ZNF658B (if available)

No data available for Orthologs for ZNF658B Gene

Paralogs for ZNF658B Gene

(470) SIMAP similar genes for ZNF658B Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with ZNF658B: view

No data available for Paralogs for ZNF658B Gene

Variants for ZNF658B Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for ZNF658B Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1001444984 -- 39,460,938(-) G/A intron_variant
rs1001862160 -- 39,443,344(-) G/C downstream_transcript_variant
rs1002458884 -- 39,460,732(-) AAAAAAA/AAAAAAAA intron_variant
rs1002509930 -- 39,459,867(-) T/G intron_variant
rs1003516492 -- 39,449,739(-) G/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ZNF658B Gene

Variant ID Type Subtype PubMed ID
dgv12689n54 CNV loss 21841781
dgv12690n54 CNV loss 21841781
dgv7541n100 CNV gain+loss 25217958
dgv7542n100 CNV gain 25217958
dgv7546n100 CNV loss 25217958
dgv7547n100 CNV gain+loss 25217958
esv2831569 CNV deletion 24192839
esv2834902 CNV deletion 24192839
esv29308 CNV gain 19812545
esv3584908 CNV loss 24956385
nsv1020579 CNV gain+loss 25217958
nsv1021539 CNV gain 25217958
nsv1022480 CNV gain+loss 25217958
nsv1119198 CNV deletion 24896259
nsv1133707 CNV deletion 24896259
nsv1161860 CNV deletion 26073780
nsv442147 CNV gain+loss 18776908
nsv469526 CNV gain 16826518
nsv471654 CNV loss 15918152
nsv515140 CNV gain 21397061
nsv614284 CNV loss 21841781
nsv614291 CNV loss 21841781
nsv614329 CNV loss 21841781
nsv8451 CNV gain 18304495

Additional Variant Information for ZNF658B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF658B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ZNF658B Gene

Disorders for ZNF658B Gene

Additional Disease Information for ZNF658B

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for ZNF658B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF658B Gene

Publications for ZNF658B Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  2. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray SJ … Dunham I (Nature 2004) 3 4 58
  3. Artemin activates axonal growth via SFK and ERK-dependent signalling pathways in mature dorsal root ganglia neurons. (PMID: 17868192) Jeong DG … Park S (Cell biochemistry and function 2008) 3 58
  4. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P … Vidal M (Genomics 2007) 3 58
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

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