ZNF649-AS1 Gene (RNA Gene)

ZNF649 Antisense RNA 1

GC19P051888
GIFtS:
10
See more...

Aliases for ZNF649-AS1 Gene

Data sources for ZNF649-AS1 Gene:

Subcategory (RNA class) for ZNF649-AS1 Gene

lncRNA

Aliases for ZNF649-AS1 Gene

External Ids for ZNF649-AS1 Gene

Summaries for ZNF649-AS1 Gene

GeneCards Summary for ZNF649-AS1 Gene

ZNF649-AS1 (ZNF649 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ZNF649-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ZNF649-AS1 Gene

Genomics for ZNF649-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for ZNF649-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH19J051887 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE CraniofacialAtlas 250.3 +35.0 34978 3.2 ZBTB10 ETS1 ZEB1 SIN3A GABPA YY1 ZBTB33 POLR2A ZFP37 MYC ZNF577 lnc-ZNF649-3 ZNF649-AS1 ZNF175 ZNF614 ZNF137P ZNF578 ZNF649 ENSG00000269483 ZNF432
GH19J051890 Promoter 0.5 Ensembl 0.3 +37.4 37378 0.4 TRIM28 POLR2A ZNF577 ZNF350 FPR3 lnc-ZNF649-3 ZNF649 ZNF649-AS1 FPR1
GH19J051896 Promoter 0.4 EPDnew 0.3 +43.5 43530 0.1 POLR2A lnc-ZNF577-1 ZNF577 ZNF649 ZNF649-AS1
GH19J051893 Enhancer 0.2 ENCODE 0.3 +40.5 40510 0.4 ZNF577 FPR3 lnc-ZNF577-1 ZNF649 ZNF649-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ZNF649-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ZNF649-AS1 Gene

Latest Assembly
chr19:51,853,423-51,900,531
(GRCh38/hg38)
Size:
47,109 bases
Orientation:
Plus strand

Previous Assembly
chr19:52,391,278-52,403,717
(GRCh37/hg19 by Entrez Gene)
Size:
12,440 bases
Orientation:
Plus strand

chr19:52,391,278-52,403,716
(GRCh37/hg19 by Ensembl)
Size:
12,439 bases
Orientation:
Plus strand

Genomic View for ZNF649-AS1 Gene

Genes around ZNF649-AS1 on UCSC Golden Path with GeneCards custom track
ZNF649-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ZNF649-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF649-AS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for ZNF649-AS1 Gene

Proteins for ZNF649-AS1 Gene

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Post-translational modifications for ZNF649-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZNF649-AS1 Gene

Domains & Families for ZNF649-AS1 Gene

Gene Families for ZNF649-AS1 Gene

HGNC:
genes like me logo Genes that share domains with ZNF649-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ZNF649-AS1 Gene

Function for ZNF649-AS1 Gene

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  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNF649-AS1 Gene

Localization for ZNF649-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZNF649-AS1 Gene

Pathways & Interactions for ZNF649-AS1 Gene

PathCards logo

SuperPathways for ZNF649-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ZNF649-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ZNF649-AS1 Gene

Drugs & Compounds for ZNF649-AS1 Gene

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No Compound Related Data Available

Transcripts for ZNF649-AS1 Gene

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Non-coding RNA (ncRNA) Transcripts from RNAcentral for ZNF649-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000E7DA6_9606 lncRNA 582 4

Ensembl: ENST00000600329 (view in UCSC) ,

LncBook: HSALNT0261808,

LNCipedia: ZNF649-AS1:1,

NONCODE: NONHSAT067492.2,

URS000075D7B0_9606 lncRNA 583 2

RefSeq: NR_110733,

LNCipedia: ZNF649-AS1:2,

URS00009ADEE5_9606 lncRNA 1196 1

NONCODE: NONHSAT179917.1,

URS0001BE50D8_9606 lncRNA 741 1

LncBook: HSALNT0261806,

URS0001BE11A3_9606 lncRNA 579 1

LncBook: HSALNT0261808,

ZNF649-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ZNF649-AS1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF649-AS1 Gene

No ASD Table

Relevant External Links for ZNF649-AS1 Gene

GeneLoc Exon Structure for
ZNF649-AS1

Expression for ZNF649-AS1 Gene

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mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ZNF649-AS1 Gene

mRNA expression in normal human tissues for ZNF649-AS1 Gene
mRNA expression by GTEx for ZNF649-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ZNF649-AS1

genes like me logo Genes that share expression patterns with ZNF649-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF649-AS1 Gene

Orthologs for ZNF649-AS1 Gene

Evolution for ZNF649-AS1 Gene

ENSEMBL:
Gene Tree for ZNF649-AS1 (if available)
TreeFam:
Gene Tree for ZNF649-AS1 (if available)

No data available for Orthologs for ZNF649-AS1 Gene

Paralogs for ZNF649-AS1 Gene

No data available for Paralogs for ZNF649-AS1 Gene

Variants for ZNF649-AS1 Gene

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  1. SNP Genotyping and Copy Number Assays for research

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for ZNF649-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for ZNF649-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1067e212 CNV gain 25503493
dgv143e55 CNV gain 17911159
dgv3626n100 CNV gain 25217958
dgv425n27 CNV gain 19166990
dgv6523n54 CNV gain 21841781
esv2758767 CNV gain+loss 17122850
esv3644680 CNV gain 21293372
esv3644682 CNV gain 21293372
nsv1063362 CNV gain 25217958
nsv1140251 OTHER inversion 24896259
nsv580001 CNV gain 21841781
nsv580005 CNV loss 21841781
nsv978837 CNV duplication 23825009

Additional Variant Information for ZNF649-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF649-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for ZNF649-AS1 Gene

Disorders for ZNF649-AS1 Gene

Additional Disease Information for ZNF649-AS1

Atlas
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform
Open Targets Platform

No disorders were found for ZNF649-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF649-AS1 Gene

Publications for ZNF649-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

ExternalLinks

View latest publications for ZNF649-AS1 gene in Mastermind

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Sources for ZNF649-AS1 Gene