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Aliases for ZNF629 Gene

Aliases for ZNF629 Gene

  • Zinc Finger Protein 629 2 3 5
  • Zinc Finger Protein 65 2 3 4
  • ZNF65 3 4
  • DNA-Binding Protein 3
  • KIAA0326 4
  • ZNF 3

External Ids for ZNF629 Gene

Previous HGNC Symbols for ZNF629 Gene

  • ZNF65

Previous GeneCards Identifiers for ZNF629 Gene

  • GC16M030830
  • GC16M030700
  • GC16M030697
  • GC16M028352

Summaries for ZNF629 Gene

GeneCards Summary for ZNF629 Gene

ZNF629 (Zinc Finger Protein 629) is a Protein Coding gene. Diseases associated with ZNF629 include Split-Hand/Foot Malformation 1. Gene Ontology (GO) annotations related to this gene include DNA binding transcription factor activity. An important paralog of this gene is ZSCAN2.

UniProtKB/Swiss-Prot for ZNF629 Gene

  • May be involved in transcriptional regulation.

Additional gene information for ZNF629 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF629 Gene

Genomics for ZNF629 Gene

GeneHancer (GH) Regulatory Elements for ZNF629 Gene

Promoters and enhancers for ZNF629 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I030785 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 550.8 +0.5 539 3.4 MLX ZFP64 ARID4B SIN3A ZNF2 ZBTB7B YY1 SLC30A9 ZNF213 E2F8 ZNF629 SRCAP SETD1A ENSG00000260267 INO80E SMG1P5 ENSG00000260304 ZNF764 NPIPB13 RNF40
GH16I030566 Promoter/Enhancer 2.3 FANTOM5 Ensembl ENCODE dbSUPER 45.5 +217.4 217403 6 ZFP64 FEZF1 DMAP1 YY1 ZNF213 E2F8 ZNF416 ZNF143 ZNF548 SP3 SETD1A SRCAP ENSG00000260267 FUS INO80E ZNF747 NPIPB13 ZNF764 SMG1P5 SMG1P2
GH16I030052 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 37 +733.1 733072 3.1 CLOCK MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ALDOA FAM57B SETD1A SRCAP NPIPB12 INO80E SMG1P5 SMG1P2 ZNF764 ZNF747
GH16I029942 Enhancer 1.6 FANTOM5 Ensembl ENCODE 41 +843.3 843295 3.7 FEZF1 ZNF213 SP3 MEF2D ZNF610 GLIS1 RCOR2 NBN KDM1A WT1 INO80E SRCAP ENSG00000260853 ZNF785 NPIPB12 SPNS1 ENSG00000260367 PRR14 SMG1P5 NFATC2IP
GH16I031071 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 19.3 -286.4 -286363 5 CLOCK MLX ZFP64 DMAP1 YBX1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF646 ZNF668 PIR38332 PIR37153 ZNF785 FUS ZNF720 KAT8 SETD1A ZNF688
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ZNF629 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the ZNF629 gene promoter:

Genomic Locations for ZNF629 Gene

Genomic Locations for ZNF629 Gene
8,829 bases
Minus strand

Genomic View for ZNF629 Gene

Genes around ZNF629 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF629 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF629 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF629 Gene

Proteins for ZNF629 Gene

  • Protein details for ZNF629 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Zinc finger protein 629
    Protein Accession:
    Secondary Accessions:
    • Q15938

    Protein attributes for ZNF629 Gene

    869 amino acids
    Molecular mass:
    96620 Da
    Quaternary structure:
    No Data Available
    • Sequence=BAA20784.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for ZNF629 Gene

Post-translational modifications for ZNF629 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZNF629 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ZNF629 Gene

Domains & Families for ZNF629 Gene

Gene Families for ZNF629 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Transcription factors

Protein Domains for ZNF629 Gene

Suggested Antigen Peptide Sequences for ZNF629 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the krueppel C2H2-type zinc-finger protein family.
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
genes like me logo Genes that share domains with ZNF629: view

Function for ZNF629 Gene

Molecular function for ZNF629 Gene

UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation.

Phenotypes From GWAS Catalog for ZNF629 Gene

Gene Ontology (GO) - Molecular Function for ZNF629 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0003700 DNA binding transcription factor activity IBA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF629: view
genes like me logo Genes that share phenotypes with ZNF629: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ZNF629 Gene

Localization for ZNF629 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF629 Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ZNF629 gene
Compartment Confidence
nucleus 5
golgi apparatus 2

Subcellular locations from the

Human Protein Atlas (HPA)
  • Nucleus (3)
  • Golgi apparatus (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for ZNF629 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZNF629: view

Pathways & Interactions for ZNF629 Gene

SuperPathways for ZNF629 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ZNF629 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IBA --
genes like me logo Genes that share ontologies with ZNF629: view

No data available for Pathways by source and SIGNOR curated interactions for ZNF629 Gene

Drugs & Compounds for ZNF629 Gene

No Compound Related Data Available

Transcripts for ZNF629 Gene

mRNA/cDNA for ZNF629 Gene

(3) REFSEQ mRNAs :
(6) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZNF629 Gene

Zinc finger protein 629:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF629 Gene

No ASD Table

Relevant External Links for ZNF629 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for ZNF629 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZNF629 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for ZNF629 Gene

This gene is overexpressed in Platelet (25.7), Fetal Brain (22.6), and Retina (10.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for ZNF629 Gene

Protein tissue co-expression partners for ZNF629 Gene

NURSA nuclear receptor signaling pathways regulating expression of ZNF629 Gene:


SOURCE GeneReport for Unigene cluster for ZNF629 Gene:


Evidence on tissue expression from TISSUES for ZNF629 Gene

  • Nervous system(4.3)
  • Liver(4.2)
genes like me logo Genes that share expression patterns with ZNF629: view

No data available for mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF629 Gene

Orthologs for ZNF629 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ZNF629 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia ZNF629 33 34
  • 99.58 (n)
(Canis familiaris)
Mammalia ZNF629 33 34
  • 90.28 (n)
(Bos Taurus)
Mammalia ZNF629 33 34
  • 90.25 (n)
(Mus musculus)
Mammalia Zfp629 33 16 34
  • 86.08 (n)
(Rattus norvegicus)
Mammalia Zfp629 33
  • 85.99 (n)
(Monodelphis domestica)
Mammalia ZNF629 34
  • 79 (a)
(Ornithorhynchus anatinus)
Mammalia ZNF629 34
  • 72 (a)
(Gallus gallus)
Aves -- 34
  • 40 (a)
(Anolis carolinensis)
Reptilia -- 34
  • 49 (a)
-- 34
  • 48 (a)
-- 34
  • 42 (a)
-- 34
  • 40 (a)
-- 34
  • 39 (a)
-- 34
  • 39 (a)
-- 34
  • 38 (a)
-- 34
  • 38 (a)
-- 34
  • 37 (a)
-- 34
  • 34 (a)
-- 34
  • 33 (a)
-- 34
  • 27 (a)
(Danio rerio)
Actinopterygii si:zfos-44a5.2 34
  • 45 (a)
BX640537.2 34
  • 41 (a)
AL954741.1 34
  • 40 (a)
CABZ01006831.1 34
  • 39 (a)
CABZ01006835.1 34
  • 38 (a)
CU672268.1 34
  • 38 (a)
zgc:174712 34
  • 37 (a)
CABZ01075191.1 34
  • 36 (a)
si:dkey-20i20.5 34
  • 36 (a)
si:ch211-235i11.2 34
  • 34 (a)
CABZ01048402.1 34
  • 33 (a)
BX000701.1 34
  • 32 (a)
zgc:113389 34
  • 31 (a)
FP326649.1 34
  • 30 (a)
Species where no ortholog for ZNF629 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ZNF629 Gene

Gene Tree for ZNF629 (if available)
Gene Tree for ZNF629 (if available)

Paralogs for ZNF629 Gene

Paralogs for ZNF629 Gene

(476) SIMAP similar genes for ZNF629 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with ZNF629: view

Variants for ZNF629 Gene

Sequence variations from dbSNP and Humsavar for ZNF629 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000152871 -- 30,778,930(-) T/A 3_prime_UTR_variant
rs1000387459 -- 30,786,774(-) G/A intron_variant
rs1000611485 -- 30,783,891(-) G/A coding_sequence_variant, missense_variant
rs1001054900 -- 30,785,957(-) G/C intron_variant
rs1001081345 -- 30,782,609(-) C/T coding_sequence_variant, synonymous_variant

Structural Variations from Database of Genomic Variants (DGV) for ZNF629 Gene

Variant ID Type Subtype PubMed ID
nsv469724 CNV loss 16826518
nsv833188 CNV loss 17160897
nsv9438 CNV gain 18304495

Variation tolerance for ZNF629 Gene

Residual Variation Intolerance Score: 23.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.65; 45.65% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for ZNF629 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF629 Gene

Disorders for ZNF629 Gene

MalaCards: The human disease database

(1) MalaCards diseases for ZNF629 Gene - From: DISEASES

Disorder Aliases PubMed IDs
split-hand/foot malformation 1
  • shfm1
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for ZNF629

genes like me logo Genes that share disorders with ZNF629: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ZNF629 Gene

Publications for ZNF629 Gene

  1. Prediction of the coding sequences of unidentified human genes. VII. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro. (PMID: 9205841) Nagase T … Ohara O (DNA research : an international journal for rapid publication of reports on genes and genomes 1997) 2 3 4 58
  2. Clustering of C2-H2 zinc finger motif sequences within telomeric and fragile site regions of human chromosomes. (PMID: 1505991) Lichter P … Ward DC (Genomics 1992) 3 4 58
  3. Characterization and mapping of human genes encoding zinc finger proteins. (PMID: 1946370) Bray P … Dawid IB (Proceedings of the National Academy of Sciences of the United States of America 1991) 3 4 58
  4. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 58
  5. Site-specific mapping of the human SUMO proteome reveals co-modification with phosphorylation. (PMID: 28112733) Hendriks IA … Nielsen ML (Nature structural & molecular biology 2017) 4 58

Products for ZNF629 Gene

Sources for ZNF629 Gene

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