Aliases for ZNF562 Gene

Aliases for ZNF562 Gene

  • Zinc Finger Protein 562 2 3 4 5

External Ids for ZNF562 Gene

Previous GeneCards Identifiers for ZNF562 Gene

  • GC19M009621
  • GC19M009759
  • GC19M009340

Summaries for ZNF562 Gene

GeneCards Summary for ZNF562 Gene

ZNF562 (Zinc Finger Protein 562) is a Protein Coding gene. Among its related pathways are Gene Expression and Herpes simplex virus 1 infection. Gene Ontology (GO) annotations related to this gene include nucleic acid binding. An important paralog of this gene is ZNF561.

UniProtKB/Swiss-Prot Summary for ZNF562 Gene

Additional gene information for ZNF562 Gene

No data available for Entrez Gene Summary , CIViC Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ZNF562 Gene

Genomics for ZNF562 Gene

GeneHancer (GH) Regulatory Elements for ZNF562 Gene

Promoters and enhancers for ZNF562 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J009673 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 510.7 +0.8 802 3 ZBTB40 ZNF217 POLR2G GTF2E2 PHF8 JUND ZFX ZIC2 POLR2A ZBTB10 ZNF561 ZNF562 piR-43105-317 ZNF266 KRI1 RAVER1 ZNF559 ILF3 ZNF317 DNMT1
GH19J010100 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 41.7 -429.1 -429085 8.3 RXRA ZBTB40 ZNF217 EP300 SIN3A NRF1 MYC POLR2G USF1 SP1 PPAN ANGPTL6 PPAN-P2RY11 ZNF699 LOC100419831 FBXL12 ZNF561 ILF3 ZNF317 ZNF559
GH19J010379 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 38 -705.2 -705199 2.2 ZNF217 EP300 SIN3A NRF1 POLR2G SP1 PHF8 TEAD4 FOS ZIC2 TYK2 lnc-CDC37-1 lnc-PDE4A-3 ILF3 FBXL12 KRI1 ZNF561 RAVER1 LOC100419831 PPAN
GH19J010110 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE 28.6 -437.7 -437726 5.2 CTCF POLR2G SP1 ZNF10 EP300 ZIC2 SNRNP70 POLR2A ZBTB10 TCF7 P2RY11 piR-54092 ILF3 ZNF266 ZNF317 ZNF699 FBXL12 KRI1 PPAN ZNF559
GH19J010285 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE dbSUPER 20.2 -614.4 -614353 7.5 HNRNPK ZBTB40 CTCF ZSCAN5C SIN3A NRF1 POLR2G USF1 SP1 TEAD4 ICAM5 ENSG00000267607 ICAM4 ZNF266 ZNF699 FBXL12 ZNF561 ILF3 KRI1 RAVER1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ZNF562 on UCSC Golden Path with GeneCards custom track

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for ZNF562

Top Transcription factor binding sites by QIAGEN in the ZNF562 gene promoter:
  • c-Myc
  • C/EBPalpha
  • CHOP-10
  • FAC1
  • LCR-F1
  • Max1
  • Nkx3-1
  • Nkx3-1 v1
  • Pbx1a
  • YY1

Genomic Locations for ZNF562 Gene

Genomic Locations for ZNF562 Gene
chr19:9,641,807-9,675,302
(GRCh38/hg38)
Size:
33,496 bases
Orientation:
Minus strand
chr19:9,759,330-9,785,776
(GRCh37/hg19)
Size:
26,447 bases
Orientation:
Minus strand

Genomic View for ZNF562 Gene

Genes around ZNF562 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF562 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF562 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF562 Gene

Proteins for ZNF562 Gene

  • Protein details for ZNF562 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6V9R5-ZN562_HUMAN
    Recommended name:
    Zinc finger protein 562
    Protein Accession:
    Q6V9R5
    Secondary Accessions:
    • Q32MN2
    • Q9NXS5

    Protein attributes for ZNF562 Gene

    Size:
    426 amino acids
    Molecular mass:
    48563 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for ZNF562 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZNF562 Gene

Post-translational modifications for ZNF562 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ZNF562 Gene

Domains & Families for ZNF562 Gene

Gene Families for ZNF562 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Transcription factors

Protein Domains for ZNF562 Gene

Blocks:
  • C2H2-type zinc finger signature
  • KRAB box
InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for ZNF562 Gene

GenScript: Design optimal peptide antigens:
  • cDNA FLJ54726, highly similar to Zinc finger protein 562 (B4DZP9_HUMAN)
  • cDNA FLJ54578, highly similar to Zinc finger protein 562 (B4E2P7_HUMAN)
  • Zinc finger protein 562 (ZN562_HUMAN)

Graphical View of Domain Structure for InterPro Entry

Q6V9R5

UniProtKB/Swiss-Prot:

ZN562_HUMAN :
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
genes like me logo Genes that share domains with ZNF562: view

Function for ZNF562 Gene

Molecular function for ZNF562 Gene

UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation.

Phenotypes From GWAS Catalog for ZNF562 Gene

Gene Ontology (GO) - Molecular Function for ZNF562 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF562: view
genes like me logo Genes that share phenotypes with ZNF562: view

miRNA for ZNF562 Gene

miRTarBase miRNAs that target ZNF562

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ZNF562 Gene

Localization for ZNF562 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF562 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ZNF562 gene
Compartment Confidence
nucleus 4
cytosol 2

Subcellular locations from the

Human Protein Atlas (HPA)

Gene Ontology (GO) - Cellular Components for ZNF562 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZNF562: view

Pathways & Interactions for ZNF562 Gene

genes like me logo Genes that share pathways with ZNF562: view

Pathways by source for ZNF562 Gene

2 Reactome pathways for ZNF562 Gene
1 KEGG pathway for ZNF562 Gene

Gene Ontology (GO) - Biological Process for ZNF562 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZNF562: view

No data available for SIGNOR curated interactions for ZNF562 Gene

Drugs & Compounds for ZNF562 Gene

No Compound Related Data Available

Transcripts for ZNF562 Gene

mRNA/cDNA for ZNF562 Gene

4 REFSEQ mRNAs :
11 NCBI additional mRNA sequence :
8 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF562 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b ^ 5a · 5b ^ 6a · 6b · 6c · 6d
SP1: -
SP2: -
SP3: - - -
SP4: - -
SP5:
SP6: - - -

Relevant External Links for ZNF562 Gene

GeneLoc Exon Structure for
ZNF562

Expression for ZNF562 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ZNF562 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ZNF562

SOURCE GeneReport for Unigene cluster for ZNF562 Gene:

Hs.371107

Evidence on tissue expression from TISSUES for ZNF562 Gene

  • Intestine(4.2)
genes like me logo Genes that share expression patterns with ZNF562: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF562 Gene

Orthologs for ZNF562 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZNF562 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZNF562 31
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Zfp266 31
  • 41 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 31
  • 35 (a)
OneToMany
cow
(Bos Taurus)
Mammalia -- 31
  • 23 (a)
OneToMany
Species where no ortholog for ZNF562 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZNF562 Gene

ENSEMBL:
Gene Tree for ZNF562 (if available)
TreeFam:
Gene Tree for ZNF562 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for ZNF562: view image

Paralogs for ZNF562 Gene

(500) SIMAP similar genes for ZNF562 Gene using alignment to 9 proteins:

  • ZN562_HUMAN
  • B4DZP9_HUMAN
  • B4E2P7_HUMAN
  • F5H1B4_HUMAN
  • K7EIE6_HUMAN
  • K7ELE4_HUMAN
  • K7EN01_HUMAN
  • K7ENE4_HUMAN
  • K7EQZ2_HUMAN

Pseudogenes.org Pseudogenes for ZNF562 Gene

genes like me logo Genes that share paralogs with ZNF562: view

Variants for ZNF562 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for ZNF562 Gene

SNP ID Clinical significance and condition Chr 19 pos Variation AA Info Type
rs1059199 -. - p.Lys205Glup.Glu260Lys
rs1163497365 - p.Phe178Leu

Additional dbSNP identifiers (rs#s) for ZNF562 Gene

Structural Variations from Database of Genomic Variants (DGV) for ZNF562 Gene

Variant ID Type Subtype PubMed ID
esv2661640 CNV deletion 23128226
esv2718156 CNV deletion 23290073
esv3643639 CNV loss 21293372
esv3643640 CNV loss 21293372
nsv1060112 CNV gain 25217958
nsv963003 CNV duplication 23825009

Variation tolerance for ZNF562 Gene

Residual Variation Intolerance Score: 74.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.58; 30.53% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for ZNF562 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF562

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF562 Gene

Disorders for ZNF562 Gene

Additional Disease Information for ZNF562

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for ZNF562 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF562 Gene

Publications for ZNF562 Gene

No publications were found for ZNF562 Gene.

Products for ZNF562 Gene

Sources for ZNF562 Gene