Aliases for ZNF561-AS1 Gene

Subcategory (RNA class) for ZNF561-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ZNF561-AS1 Gene

  • ZNF561 Antisense RNA 1 (Head To Head) 2 3 5
  • ZNF561-AS1 2 5 165
  • C19orf82 3 4
  • Chromosome 19 Open Reading Frame 82 2
  • Uncharacterized Protein ZNF561-AS1 4
  • Uncharacterized Protein C19orf82 3
  • ZNF561 Antisense Gene Protein 1 4
  • ZNF561 Antisense RNA 1 4
  • NONHSAG024744.2 91
  • HSALNG0123842 164

External Ids for ZNF561-AS1 Gene

Previous HGNC Symbols for ZNF561-AS1 Gene

  • C19orf82

Summaries for ZNF561-AS1 Gene

GeneCards Summary for ZNF561-AS1 Gene

ZNF561-AS1 (ZNF561 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ZNF561-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ZNF561-AS1 Gene

Genomics for ZNF561-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ZNF561-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J009620 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 605.2 +0.4 372 3.6 SP1 CREB1 ATF7 PRDM10 ZNF629 TFE3 SIX5 LEF1 ZNF692 POLR2A ZNF561 ZNF561-AS1 piR-30876-047 lnc-ZNF562-2 ZNF266 KRI1 FBXL12 ZNF558 RAVER1 PPAN
GH19J009625 Enhancer 0.9 Ensembl ENCODE 5.2 +4.8 4760 0.8 CTCF JUND PKNOX1 RXRB REST RAD21 IRF2 TRIM22 SCRT2 CTBP1 ZNF561 ZNF846 UBL5 ZNF561-AS1 piR-30876-047 piR-59475 ZNF562
GH19J009627 Enhancer 0.2 Ensembl 0.4 +6.7 6652 0.6 ZNF561 ZNF846 piR-30876-047 ZNF561-AS1 piR-59475 ZNF562
GH19J009637 Enhancer 0.2 FANTOM5 0.4 +16.0 16044 0.3 piR-59475 ZNF846 ZNF812P UBL5 ZNF559 piR-30876-047 ZNF561 ZNF561-AS1 ZNF562
GH19J009638 Enhancer 0.2 FANTOM5 0.4 +17.1 17102 0.3 piR-59475 ZNF561 OR7D4 ZNF846 ZNF177 OR7E24 OLFM2 ZNF559 ZNF562 ZNF426
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ZNF561-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ZNF561-AS1 Gene

Genomic Locations for ZNF561-AS1 Gene
chr19:9,621,249-9,647,203
(GRCh38/hg38)
Size:
25,955 bases
Orientation:
Plus strand
chr19:9,731,967-9,756,572
(GRCh37/hg19)
Size:
24,606 bases
Orientation:
Plus strand

Genomic View for ZNF561-AS1 Gene

Genes around ZNF561-AS1 on UCSC Golden Path with GeneCards custom track
ZNF561-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ZNF561-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF561-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF561-AS1 Gene

Proteins for ZNF561-AS1 Gene

  • Protein details for ZNF561-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    K7EIQ3-CS082_HUMAN
    Recommended name:
    Uncharacterized protein ZNF561-AS1
    Protein Accession:
    K7EIQ3

    Protein attributes for ZNF561-AS1 Gene

    Size:
    104 amino acids
    Molecular mass:
    11601 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for ZNF561-AS1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZNF561-AS1 Gene

Post-translational modifications for ZNF561-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZNF561-AS1 Gene

Domains & Families for ZNF561-AS1 Gene

Gene Families for ZNF561-AS1 Gene

Protein Domains for ZNF561-AS1 Gene

ProtoNet:
genes like me logo Genes that share domains with ZNF561-AS1: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ZNF561-AS1 Gene

Function for ZNF561-AS1 Gene

Phenotypes From GWAS Catalog for ZNF561-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNF561-AS1 Gene

Localization for ZNF561-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZNF561-AS1 Gene

Pathways & Interactions for ZNF561-AS1 Gene

PathCards logo

SuperPathways for ZNF561-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ZNF561-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ZNF561-AS1 Gene

Drugs & Compounds for ZNF561-AS1 Gene

No Compound Related Data Available

Transcripts for ZNF561-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ZNF561-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075C770_9606 lncRNA 1834 4

HGNC: 27613,

RefSeq: NR_122038,

LNCipedia: ZNF561-AS1:3,

NONCODE: NONHSAT179428.1,

URS00009BB9E4_9606 lncRNA 782 4

Ensembl: ENST00000592851 (view in UCSC) ,

LncBook: HSALNT0255548,

LNCipedia: ZNF561-AS1:9,

NONCODE: NONHSAT179433.1,

URS00009C0C88_9606 lncRNA 551 4

Ensembl: ENST00000591056 (view in UCSC) ,

LncBook: HSALNT0255546,

LNCipedia: ZNF561-AS1:8,

NONCODE: NONHSAT179432.1,

URS0000D5BC7C_9606 lncRNA 315 2

Ensembl: ENST00000616951 (view in UCSC) ,

LNCipedia: ZNF561-AS1:10,

URS0000EF50BF_9606 lncRNA 3334 1

Ensembl: ENST00000652787 (view in UCSC) ,

ZNF561-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ZNF561-AS1 Gene

1 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ZNF561-AS1

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF561-AS1 Gene

No ASD Table

Relevant External Links for ZNF561-AS1 Gene

GeneLoc Exon Structure for
ZNF561-AS1

Expression for ZNF561-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ZNF561-AS1 Gene

Protein differential expression in normal tissues from HIPED for ZNF561-AS1 Gene

This gene is overexpressed in Cerebrospinal fluid (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for ZNF561-AS1 Gene



Protein tissue co-expression partners for ZNF561-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ZNF561-AS1

genes like me logo Genes that share expression patterns with ZNF561-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF561-AS1 Gene

Orthologs for ZNF561-AS1 Gene

Evolution for ZNF561-AS1 Gene

ENSEMBL:
Gene Tree for ZNF561-AS1 (if available)
TreeFam:
Gene Tree for ZNF561-AS1 (if available)

No data available for Orthologs for ZNF561-AS1 Gene

Paralogs for ZNF561-AS1 Gene

No data available for Paralogs for ZNF561-AS1 Gene

Variants for ZNF561-AS1 Gene

Additional dbSNP identifiers (rs#s) for ZNF561-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for ZNF561-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2718156 CNV deletion 23290073
esv2718157 CNV deletion 23290073
nsv1060112 CNV gain 25217958

Variation tolerance for ZNF561-AS1 Gene

Gene Damage Index Score: 0.94; 19.45% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for ZNF561-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF561-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for ZNF561-AS1 Gene

Disorders for ZNF561-AS1 Gene

No disorders were found for ZNF561-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF561-AS1 Gene

Publications for ZNF561-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4
  2. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J … Lucas SM (Nature 2004) 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for ZNF561-AS1 Gene

Products for ZNF561-AS1 Gene

Sources for ZNF561-AS1 Gene