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Aliases for ZNF561-AS1 Gene

Subcategory (RNA class) for ZNF561-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ZNF561-AS1 Gene

  • ZNF561 Antisense RNA 1 (Head To Head) 2 3 5
  • C19orf82 3 4
  • Chromosome 19 Open Reading Frame 82 2
  • Uncharacterized Protein C19orf82 3
  • ZNF561 Antisense Gene Protein 1 4
  • ZNF561 Antisense RNA 1 4

External Ids for ZNF561-AS1 Gene

Previous HGNC Symbols for ZNF561-AS1 Gene

  • C19orf82

Summaries for ZNF561-AS1 Gene

GeneCards Summary for ZNF561-AS1 Gene

ZNF561-AS1 (ZNF561 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ZNF561-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF561-AS1 Gene

Genomics for ZNF561-AS1 Gene

GeneHancer (GH) Regulatory Elements for ZNF561-AS1 Gene

Promoters and enhancers for ZNF561-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I009620 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 555.3 +0.5 530 3.2 PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 POLR2B ZNF766 ZNF561 ZNF561-AS1 ZNF266 KRI1 PPAN FBXL12 ZNF317 ZNF699 RAVER1 ZNF558
GH19I009625 Enhancer 1 Ensembl ENCODE 0.8 +4.7 4710 0.4 ELF3 PKNOX1 RB1 ARID4B SIN3A RAD21 ARID2 SCRT2 ZNF143 BCLAF1 ZNF846 UBL5 ZNF561 ZNF561-AS1 PIR53474
GH19I009596 Enhancer 0.6 ENCODE 0.3 -24.0 -24022 0.8 FOSL1 JUND JUN CEBPB FOS TRIM24 EP300 RFX5 LOC105376914 ZNF561 ZNF846 ZNF561-AS1
GH19I009637 Enhancer 0.2 FANTOM5 0.4 +16.0 16002 0.3 PIR53474 ZNF846 ZNF812P UBL5 ZNF559 ZNF561 ZNF561-AS1
GH19I009638 Enhancer 0.2 FANTOM5 0.4 +17.1 17060 0.3 PIR53474 ZNF561 OR7D4 ZNF846 ZNF177 OR7E24 OLFM2 ZNF559 ZNF562 ZNF426
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ZNF561-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ZNF561-AS1 Gene

Genomic Locations for ZNF561-AS1 Gene
chr19:9,621,291-9,645,896
(GRCh38/hg38)
Size:
24,606 bases
Orientation:
Plus strand
chr19:9,731,967-9,756,572
(GRCh37/hg19)

Genomic View for ZNF561-AS1 Gene

Genes around ZNF561-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF561-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF561-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF561-AS1 Gene

Proteins for ZNF561-AS1 Gene

  • Protein details for ZNF561-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    K7EIQ3-CS082_HUMAN
    Recommended name:
    Uncharacterized protein ZNF561-AS1
    Protein Accession:
    K7EIQ3

    Protein attributes for ZNF561-AS1 Gene

    Size:
    104 amino acids
    Molecular mass:
    11601 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for ZNF561-AS1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZNF561-AS1 Gene

Post-translational modifications for ZNF561-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZNF561-AS1 Gene

Domains & Families for ZNF561-AS1 Gene

Protein Domains for ZNF561-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ZNF561-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZNF561-AS1 Gene

Function for ZNF561-AS1 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNF561-AS1 Gene

Localization for ZNF561-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZNF561-AS1 Gene

Pathways & Interactions for ZNF561-AS1 Gene

SuperPathways for ZNF561-AS1 Gene

No Data Available

Interacting Proteins for ZNF561-AS1 Gene

Gene Ontology (GO) - Biological Process for ZNF561-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZNF561-AS1 Gene

Drugs & Compounds for ZNF561-AS1 Gene

No Compound Related Data Available

Transcripts for ZNF561-AS1 Gene

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF561-AS1 Gene

No ASD Table

Relevant External Links for ZNF561-AS1 Gene

GeneLoc Exon Structure for
ZNF561-AS1
ECgene alternative splicing isoforms for
ZNF561-AS1

Expression for ZNF561-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZNF561-AS1 Gene

Protein differential expression in normal tissues from HIPED for ZNF561-AS1 Gene

This gene is overexpressed in Cerebrospinal fluid (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for ZNF561-AS1 Gene



Protein tissue co-expression partners for ZNF561-AS1 Gene

genes like me logo Genes that share expression patterns with ZNF561-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF561-AS1 Gene

Orthologs for ZNF561-AS1 Gene

Evolution for ZNF561-AS1 Gene

ENSEMBL:
Gene Tree for ZNF561-AS1 (if available)
TreeFam:
Gene Tree for ZNF561-AS1 (if available)

No data available for Orthologs for ZNF561-AS1 Gene

Paralogs for ZNF561-AS1 Gene

No data available for Paralogs for ZNF561-AS1 Gene

Variants for ZNF561-AS1 Gene

Sequence variations from dbSNP and Humsavar for ZNF561-AS1 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000220602 -- 9,628,446(+) G/A intron_variant
rs1000643511 -- 9,632,434(+) C/A intron_variant
rs1000894040 -- 9,622,535(+) G/T intron_variant
rs1001158527 -- 9,620,750(+) T/G upstream_transcript_variant
rs1001390051 -- 9,621,599(+) G/A/C non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ZNF561-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1060112 CNV gain 25217958
esv2718157 CNV deletion 23290073
esv2718156 CNV deletion 23290073

Variation tolerance for ZNF561-AS1 Gene

Gene Damage Index Score: 0.94; 19.45% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for ZNF561-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF561-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF561-AS1 Gene

Disorders for ZNF561-AS1 Gene

Additional Disease Information for ZNF561-AS1

No disorders were found for ZNF561-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF561-AS1 Gene

Publications for ZNF561-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  2. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J … Lucas SM (Nature 2004) 4 58
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for ZNF561-AS1 Gene

Sources for ZNF561-AS1 Gene

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