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Aliases for ZNF542P Gene

Aliases for ZNF542P Gene

  • Zinc Finger Protein 542, Pseudogene 2 3 5
  • ZNF542 3 4
  • Zinc Finger Protein 542 Pseudogene 4
  • Zinc Finger Protein Pseudogene 3
  • Zinc Finger Protein 542 2

External Ids for ZNF542P Gene

Previous HGNC Symbols for ZNF542P Gene

  • ZNF542

Previous GeneCards Identifiers for ZNF542P Gene

  • GC19P056883

Summaries for ZNF542P Gene

GeneCards Summary for ZNF542P Gene

ZNF542P (Zinc Finger Protein 542, Pseudogene) is a Pseudogene.

UniProtKB/Swiss-Prot for ZNF542P Gene

  • May be involved in transcriptional regulation.

Additional gene information for ZNF542P Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF542P Gene

Genomics for ZNF542P Gene

GeneHancer (GH) Regulatory Elements for ZNF542P Gene

Promoters and enhancers for ZNF542P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J056367 Promoter/Enhancer 1.5 Ensembl ENCODE 659.7 +0.4 393 2 ATF1 ARID4B SIN3A DMAP1 GLI4 ZNF2 YY1 POLR2B GLIS2 ZNF143 ZNF542P ENSG00000267606 ZSCAN5A ENSG00000267429 ENSG00000267192 PIR54720
GH19J056594 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 46.3 +227.3 227341 1.4 HDGF PKNOX1 ZNF133 ARID4B SIN3A FEZF1 YBX1 GLI4 ZNF48 YY1 ZNF71 U2AF2 ZNF264 ZNF17 ZNF543 ZNF773 ZNF549 ZNF550 ENSG00000269696 ENSG00000267523
GH19J056403 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 36.5 +36.1 36050 2 HDGF ARNT ARID4B SIN3A DMAP1 YY1 POLR2B ZNF766 ZNF416 ZNF207 ZNF582 ZNF582-AS1 ZFP28 ZNF470 ZNF471 FIZ1 ZNF264 ZNF460-AS1 ENSG00000269696 ZNF542P
GH19J055519 Enhancer 1.4 FANTOM5 Ensembl ENCODE 40.6 -847.9 -847890 1 HDGF ATF1 ZNF493 ZNF133 YBX1 GLI4 ZNF416 ZNF548 FOS ATF7 U2AF2 ZNF471 FIZ1 ZNF582 ZNF581 ZNF580 SSC5D ENSG00000267523 NAT14 ZNF667
GH19J055503 Enhancer 1.2 Ensembl ENCODE 46.2 -864.1 -864130 1.6 PKNOX1 CLOCK ARNT ARID4B SIN3A DMAP1 ZNF2 CBX5 ZNF213 E2F8 U2AF2 ZNF667 FIZ1 ZNF582-AS1 NAT14 ZNF667-AS1 ZNF582 ZNF542P ZNF583 ENSG00000267523
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ZNF542P on UCSC Golden Path with GeneCards custom track

Genomic Locations for ZNF542P Gene

Genomic Locations for ZNF542P Gene
chr19:56,368,099-56,379,828
(GRCh38/hg38)
Size:
11,730 bases
Orientation:
Plus strand
chr19:56,879,468-56,891,197
(GRCh37/hg19)

Genomic View for ZNF542P Gene

Genes around ZNF542P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF542P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF542P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF542P Gene

Proteins for ZNF542P Gene

  • Protein details for ZNF542P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5EBM4-ZN542_HUMAN
    Recommended name:
    Putative zinc finger protein 542
    Protein Accession:
    Q5EBM4
    Secondary Accessions:
    • B3KUG2
    • B4DLV1
    • Q6N061

    Protein attributes for ZNF542P Gene

    Size:
    170 amino acids
    Molecular mass:
    19729 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAG53424.1; Type=Erroneous translation; Note=Wrong choice of CDS.; Evidence={ECO:0000305}; Sequence=CAE45809.1; Type=Erroneous translation; Note=Wrong choice of CDS.; Evidence={ECO:0000305};

    Alternative splice isoforms for ZNF542P Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZNF542P Gene

Post-translational modifications for ZNF542P Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ZNF542P Gene

Domains & Families for ZNF542P Gene

Gene Families for ZNF542P Gene

Protein Domains for ZNF542P Gene

Suggested Antigen Peptide Sequences for ZNF542P Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q5EBM4

UniProtKB/Swiss-Prot:

ZN542_HUMAN :
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
genes like me logo Genes that share domains with ZNF542P: view

Function for ZNF542P Gene

Molecular function for ZNF542P Gene

UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation.

Phenotypes From GWAS Catalog for ZNF542P Gene

Gene Ontology (GO) - Molecular Function for ZNF542P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF542P: view
genes like me logo Genes that share phenotypes with ZNF542P: view

Animal Model Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNF542P Gene

Localization for ZNF542P Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF542P Gene

Gene Ontology (GO) - Cellular Components for ZNF542P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZNF542P: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for ZNF542P Gene

Pathways & Interactions for ZNF542P Gene

SuperPathways for ZNF542P Gene

No Data Available

Interacting Proteins for ZNF542P Gene

Gene Ontology (GO) - Biological Process for ZNF542P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZNF542P: view

No data available for Pathways by source and SIGNOR curated interactions for ZNF542P Gene

Drugs & Compounds for ZNF542P Gene

No Compound Related Data Available

Transcripts for ZNF542P Gene

mRNA/cDNA for ZNF542P Gene

(1) REFSEQ mRNAs :
(76) Selected AceView cDNA sequences:
(12) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF542P Gene

No ASD Table

Relevant External Links for ZNF542P Gene

GeneLoc Exon Structure for
ZNF542P
ECgene alternative splicing isoforms for
ZNF542P

Expression for ZNF542P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZNF542P Gene

NURSA nuclear receptor signaling pathways regulating expression of ZNF542P Gene:

ZNF542P
genes like me logo Genes that share expression patterns with ZNF542P: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF542P Gene

Orthologs for ZNF542P Gene

Evolution for ZNF542P Gene

ENSEMBL:
Gene Tree for ZNF542P (if available)
TreeFam:
Gene Tree for ZNF542P (if available)

No data available for Orthologs for ZNF542P Gene

Paralogs for ZNF542P Gene

No data available for Paralogs for ZNF542P Gene

Variants for ZNF542P Gene

Sequence variations from dbSNP and Humsavar for ZNF542P Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000011652 -- 56,380,218(+) C/T downstream_transcript_variant
rs1000086638 -- 56,376,382(+) A/G intron_variant
rs1000781430 -- 56,376,058(+) G/C intron_variant
rs1000854882 -- 56,375,791(+) A/C intron_variant
rs1001519014 -- 56,379,201(+) T/C non_coding_transcript_variant

Additional Variant Information for ZNF542P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF542P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ZNF542P Gene

Disorders for ZNF542P Gene

Additional Disease Information for ZNF542P

No disorders were found for ZNF542P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF542P Gene

Publications for ZNF542P Gene

  1. The full-ORF clone resource of the German cDNA Consortium. (PMID: 17974005) Bechtel S … Schupp I (BMC genomics 2007) 4 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 4 58
  4. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J … Lucas SM (Nature 2004) 4 58
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 58

Products for ZNF542P Gene

Sources for ZNF542P Gene

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