Aliases for ZNF528-AS1 Gene

Data sources for ZNF528-AS1 Gene:

Subcategory (RNA class) for ZNF528-AS1 Gene

lncRNA

Aliases for ZNF528-AS1 Gene

External Ids for ZNF528-AS1 Gene

Summaries for ZNF528-AS1 Gene

GeneCards Summary for ZNF528-AS1 Gene

ZNF528-AS1 (ZNF528 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ZNF528-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ZNF528-AS1 Gene

Genomics for ZNF528-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ZNF528-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J052396 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 250.7 +0.1 66 2.8 MXD4 NR2C1 SMAD5 ETS1 POLR2A ELF1 THAP11 GABPA ZNF511 HCFC1 ZNF528 NONHSAG026411.2 ZNF528-AS1 ZNF534 ZNF175 ZNF611 ENSG00000260160
GH19J051687 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 19.9 +707.4 707376 6.9 ZSCAN16 ZBTB10 FEZF1 NR2C1 MNT IKZF1 SMAD5 MBD2 ZBTB7B ZEB1 SPACA6 ZNF137P ZNF808 ZNF841 ZNF577 ZNF616 ZNF766 ZNF175 ENSG00000268970 ZNF836
GH19J052369 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE CraniofacialAtlas 6.6 +27.8 27766 2.2 NR2C1 ETS1 POLR2A ELF1 ZNF610 SIN3A GABPA SP2 MAX TAF1 ZNF880 HSALNG0127311 ZNF528-AS1 ENSG00000277977 ZNF528
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ZNF528-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ZNF528-AS1 Gene

Latest Assembly
chr19:52,387,629-52,397,867
(GRCh38/hg38)
Size:
10,239 bases
Orientation:
Minus strand

Previous Assembly
chr19:52,892,092-52,901,010
(GRCh37/hg19 by Entrez Gene)
Size:
8,919 bases
Orientation:
Minus strand

chr19:52,892,095-52,901,019
(GRCh37/hg19 by Ensembl)
Size:
8,925 bases
Orientation:
Minus strand

Genomic View for ZNF528-AS1 Gene

Genes around ZNF528-AS1 on UCSC Golden Path with GeneCards custom track
ZNF528-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ZNF528-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF528-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF528-AS1 Gene

Proteins for ZNF528-AS1 Gene

Post-translational modifications for ZNF528-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZNF528-AS1 Gene

Domains & Families for ZNF528-AS1 Gene

Gene Families for ZNF528-AS1 Gene

genes like me logo Genes that share domains with ZNF528-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ZNF528-AS1 Gene

Function for ZNF528-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNF528-AS1 Gene

Localization for ZNF528-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZNF528-AS1 Gene

Pathways & Interactions for ZNF528-AS1 Gene

PathCards logo

SuperPathways for ZNF528-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ZNF528-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ZNF528-AS1 Gene

Drugs & Compounds for ZNF528-AS1 Gene

No Compound Related Data Available

Transcripts for ZNF528-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ZNF528-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008B68CC_9606 lncRNA 1069 3

Ensembl: ENST00000601562 (view in UCSC) ,

LNCipedia: ZNF528-AS1:4,

NONCODE: NONHSAT067543.2,

URS00008BE910_9606 lncRNA 934 3

Ensembl: ENST00000596746 (view in UCSC) ,

LNCipedia: ZNF528-AS1:2,

NONCODE: NONHSAT067548.2,

URS0000EEF806_9606 lncRNA 2376 1

Ensembl: ENST00000663140 (view in UCSC) ,

URS0000EF0D94_9606 lncRNA 2182 1

Ensembl: ENST00000656846 (view in UCSC) ,

URS000075D4B8_9606 lncRNA 1321 1

RefSeq: NR_125345,

ZNF528-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ZNF528-AS1 Gene

6 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF528-AS1 Gene

No ASD Table

Relevant External Links for ZNF528-AS1 Gene

GeneLoc Exon Structure for
ZNF528-AS1

Expression for ZNF528-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ZNF528-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ZNF528-AS1

genes like me logo Genes that share expression patterns with ZNF528-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF528-AS1 Gene

Orthologs for ZNF528-AS1 Gene

Evolution for ZNF528-AS1 Gene

ENSEMBL:
Gene Tree for ZNF528-AS1 (if available)
TreeFam:
Gene Tree for ZNF528-AS1 (if available)

No data available for Orthologs for ZNF528-AS1 Gene

Paralogs for ZNF528-AS1 Gene

No data available for Paralogs for ZNF528-AS1 Gene

Variants for ZNF528-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for ZNF528-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for ZNF528-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv658e199 CNV deletion 23128226
esv2762048 CNV loss 21179565
esv33518 CNV gain 17666407
esv3644693 CNV loss 21293372
esv3644694 CNV loss 21293372
esv3644695 CNV loss 21293372
nsv1140251 OTHER inversion 24896259
nsv2536 CNV deletion 18451855
nsv511613 CNV loss 21212237
nsv521079 CNV loss 19592680
nsv580025 CNV loss 21841781
nsv828615 CNV loss 20364138
nsv833873 CNV gain 17160897

Additional Variant Information for ZNF528-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF528-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for ZNF528-AS1 Gene

Disorders for ZNF528-AS1 Gene

Additional Disease Information for ZNF528-AS1

No disorders were found for ZNF528-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF528-AS1 Gene

Publications for ZNF528-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for ZNF528-AS1 Gene

Products for ZNF528-AS1 Gene

Sources for ZNF528-AS1 Gene