Aliases for ZNF516-DT Gene

Subcategory (RNA class) for ZNF516-DT Gene

lncRNA

Aliases for ZNF516-DT Gene

External Ids for ZNF516-DT Gene

Previous HGNC Symbols for ZNF516-DT Gene

  • C18orf65

Previous GeneCards Identifiers for ZNF516-DT Gene

  • GC18P076496
  • GC18P076498

Summaries for ZNF516-DT Gene

GeneCards Summary for ZNF516-DT Gene

ZNF516-DT (ZNF516 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ZNF516-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ZNF516-DT Gene

Genomics for ZNF516-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ZNF516-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J076485 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 -3.8 -3750 11.2 CHD2 ZBTB10 MXD4 SP1 FEZF1 CEBPA NR2C1 ETS1 POLR2A ZEB1 ZNF516 5EW4_A-024 ZNF516-AS1 ZNF236 HSALNG0122569 ZNF516-DT HSALNG0122567 LOC105372204
GH18J076498 Promoter/Enhancer 0.5 Ensembl dbSUPER 0.7 +2.7 2662 0.8 HSALNG0122569 ZNF516 ZNF516-DT LINC00683 LINC00908 ZNF236
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ZNF516-DT on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for ZNF516-DT

Genomic Locations for ZNF516-DT Gene

Latest Assembly
chr18:76,495,339-76,498,089
(GRCh38/hg38)
Size:
2,751 bases
Orientation:
Plus strand

Previous Assembly
chr18:74,207,295-74,210,046
(GRCh37/hg19 by Entrez Gene)
Size:
2,752 bases
Orientation:
Plus strand

Genomic View for ZNF516-DT Gene

Genes around ZNF516-DT on UCSC Golden Path with GeneCards custom track
ZNF516-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ZNF516-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF516-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF516-DT Gene

Proteins for ZNF516-DT Gene

  • Protein details for ZNF516-DT Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZTR6-ZNFDT_HUMAN
    Recommended name:
    Putative uncharacterized protein ZNF516-DT
    Protein Accession:
    Q6ZTR6

    Protein attributes for ZNF516-DT Gene

    Size:
    163 amino acids
    Molecular mass:
    17236 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ZNF516-DT Gene

Post-translational modifications for ZNF516-DT Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ZNF516-DT Gene

Domains & Families for ZNF516-DT Gene

Gene Families for ZNF516-DT Gene

Protein Domains for ZNF516-DT Gene

ProtoNet:
genes like me logo Genes that share domains with ZNF516-DT: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ZNF516-DT Gene

Function for ZNF516-DT Gene

genes like me logo Genes that share phenotypes with ZNF516-DT: view

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNF516-DT Gene

Localization for ZNF516-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZNF516-DT Gene

Pathways & Interactions for ZNF516-DT Gene

PathCards logo

SuperPathways for ZNF516-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for ZNF516-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ZNF516-DT Gene

Drugs & Compounds for ZNF516-DT Gene

No Compound Related Data Available

Transcripts for ZNF516-DT Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ZNF516-DT Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007E2105_9606 lncRNA 2078 2

Ensembl: ENST00000622985 (view in UCSC) ,

LNCipedia: lnc-ZNF236-33:1,

URS0000EEAC8E_9606 lncRNA 2259 1

RefSeq: NR_164145,

ZNF516-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ZNF516-DT Gene

2 NCBI additional mRNA sequence :

CRISPR products for research

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ZNF516-DT

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF516-DT Gene

No ASD Table

Relevant External Links for ZNF516-DT Gene

GeneLoc Exon Structure for
ZNF516-DT

Expression for ZNF516-DT Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ZNF516-DT

No Expression Related Data Available

Primer products for research

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF516-DT Gene

Orthologs for ZNF516-DT Gene

Evolution for ZNF516-DT Gene

ENSEMBL:
Gene Tree for ZNF516-DT (if available)
TreeFam:
Gene Tree for ZNF516-DT (if available)

No data available for Orthologs for ZNF516-DT Gene

Paralogs for ZNF516-DT Gene

No data available for Paralogs for ZNF516-DT Gene

Variants for ZNF516-DT Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for ZNF516-DT Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for ZNF516-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF516-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ZNF516-DT Gene

Disorders for ZNF516-DT Gene

Additional Disease Information for ZNF516-DT

No disorders were found for ZNF516-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF516-DT Gene

Publications for ZNF516-DT Gene

  1. DNA sequence and analysis of human chromosome 18. (PMID: 16177791) Nusbaum C … Lander ES (Nature 2005) 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 4

No data available for Mastermind for ZNF516-DT Gene

Products for ZNF516-DT Gene

Sources for ZNF516-DT Gene