Aliases for ZNF516-AS1 Gene

Data sources for ZNF516-AS1 Gene:

Subcategory (RNA class) for ZNF516-AS1 Gene

lncRNA

Aliases for ZNF516-AS1 Gene

External Ids for ZNF516-AS1 Gene

Summaries for ZNF516-AS1 Gene

GeneCards Summary for ZNF516-AS1 Gene

ZNF516-AS1 (ZNF516 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ZNF516-AS1 include Hepatocellular Carcinoma.

Additional gene information for ZNF516-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ZNF516-AS1 Gene

Genomics for ZNF516-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ZNF516-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J076485 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 +0.0 10 11.2 CHD2 ZBTB10 MXD4 SP1 FEZF1 CEBPA NR2C1 ETS1 POLR2A ZEB1 ZNF516 5EW4_A-024 ZNF516-AS1 ZNF236 HSALNG0122569 ZNF516-DT HSALNG0122567 LOC105372204
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ZNF516-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ZNF516-AS1 Gene

Latest Assembly
chr18:76,491,579-76,494,224
(GRCh38/hg38)
Size:
2,646 bases
Orientation:
Plus strand

Previous Assembly
chr18:74,203,608-74,205,874
(GRCh37/hg19 by Entrez Gene)
Size:
2,267 bases
Orientation:
Plus strand

chr18:74,203,608-74,205,487
(GRCh37/hg19 by Ensembl)
Size:
1,880 bases
Orientation:
Plus strand

Genomic View for ZNF516-AS1 Gene

Genes around ZNF516-AS1 on UCSC Golden Path with GeneCards custom track
ZNF516-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ZNF516-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF516-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF516-AS1 Gene

Proteins for ZNF516-AS1 Gene

Post-translational modifications for ZNF516-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZNF516-AS1 Gene

Domains & Families for ZNF516-AS1 Gene

Gene Families for ZNF516-AS1 Gene

genes like me logo Genes that share domains with ZNF516-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ZNF516-AS1 Gene

Function for ZNF516-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNF516-AS1 Gene

Localization for ZNF516-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZNF516-AS1 Gene

Pathways & Interactions for ZNF516-AS1 Gene

PathCards logo

SuperPathways for ZNF516-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ZNF516-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ZNF516-AS1 Gene

Drugs & Compounds for ZNF516-AS1 Gene

No Compound Related Data Available

Transcripts for ZNF516-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ZNF516-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000077CAC5_9606 lncRNA 327 4

Ensembl: ENST00000613453 (view in UCSC) ,

LncBook: HSALNT0253347,

LNCipedia: lnc-ZNF236-8:13,

NONCODE: NONHSAT178045.1,

URS000078837D_9606 lncRNA 1202 3

RefSeq: NR_136504,

Ensembl: ENST00000581996 (view in UCSC) ,

LNCipedia: lnc-ZNF236-8:8,

URS0000EF5EC1_9606 lncRNA 631 1

Ensembl: ENST00000657360 (view in UCSC) ,

URS0000D57B8F_9606 lncRNA 2105 2

LncBook: HSALNT0253343,

LNCipedia: lnc-ZNF236-8:6,

URS000051E510_9606 lncRNA 813 2

LNCipedia: lnc-ZNF236-8:7,

NONCODE: NONHSAT059931.2,

ZNF516-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ZNF516-AS1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF516-AS1 Gene

No ASD Table

Relevant External Links for ZNF516-AS1 Gene

GeneLoc Exon Structure for
ZNF516-AS1

Expression for ZNF516-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF516-AS1 Gene

Orthologs for ZNF516-AS1 Gene

Evolution for ZNF516-AS1 Gene

ENSEMBL:
Gene Tree for ZNF516-AS1 (if available)
TreeFam:
Gene Tree for ZNF516-AS1 (if available)

No data available for Orthologs for ZNF516-AS1 Gene

Paralogs for ZNF516-AS1 Gene

No data available for Paralogs for ZNF516-AS1 Gene

Variants for ZNF516-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for ZNF516-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for ZNF516-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF516-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ZNF516-AS1 Gene

Disorders for ZNF516-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for ZNF516-AS1 Gene - From: LNC

Disorder Aliases PubMed IDs
hepatocellular carcinoma
  • hcc
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for ZNF516-AS1

Open Targets Platform
Open Targets Platform
genes like me logo Genes that share disorders with ZNF516-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ZNF516-AS1 Gene

Publications for ZNF516-AS1 Gene

  1. The long noncoding RNA expression profile of hepatocellular carcinoma identified by microarray analysis. (PMID: 25025236) Zhu J … Fu H (PloS one 2014) 74

No data available for Mastermind for ZNF516-AS1 Gene

Products for ZNF516-AS1 Gene

Sources for ZNF516-AS1 Gene