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Aliases for ZNF506 Gene

Aliases for ZNF506 Gene

  • Zinc Finger Protein 506 2 3 5

External Ids for ZNF506 Gene

Previous GeneCards Identifiers for ZNF506 Gene

  • GC19M019757
  • GC19M019763
  • GC19U900445
  • GC19M019896
  • GC19M019466
  • GC19M019902

Summaries for ZNF506 Gene

GeneCards Summary for ZNF506 Gene

ZNF506 (Zinc Finger Protein 506) is a Protein Coding gene. Among its related pathways are Gene Expression. Gene Ontology (GO) annotations related to this gene include nucleic acid binding. An important paralog of this gene is ZNF253.

UniProtKB/Swiss-Prot for ZNF506 Gene

  • May be involved in transcriptional regulation.

Additional gene information for ZNF506 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF506 Gene

Genomics for ZNF506 Gene

GeneHancer (GH) Regulatory Elements for ZNF506 Gene

Promoters and enhancers for ZNF506 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I019820 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 557 +0.0 5 2.3 PKNOX1 RB1 ZNF76 SIN3A ZNF2 KLF5 ZBTB40 YY1 ETS1 ZNF335 ZNF506 ENSG00000267581 ZNF56
GH19I019865 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 19.5 -45.0 -44973 3 PKNOX1 SMAD1 ATF1 ARID4B SIN3A DMAP1 ZNF48 YY1 ETS1 POLR2B ZNF253 ZNF93 ZNF506 ATP13A1 MEF2B NR2C2AP GATAD2A ZNF14 PBX4 VN1R77P
GH19I019374 Enhancer 1.2 Ensembl ENCODE dbSUPER 28.6 +446.6 446588 0.9 ZNF493 MZF1 ZBTB40 ZNF155 ZNF213 ZNF354C ZNF138 SCRT2 KLF7 ZNF202 NR2C2AP ATP13A1 ENSG00000268030 ENSG00000267481 ZNF90 UPF1 ZNF253 MAU2 SUGP2 ENSG00000268938
GH19I019899 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 16 -79.4 -79407 3 PKNOX1 ATF1 FOXA2 SIN3A ZNF2 YY1 GTF3C2 TCF12 POLR2B ZNF766 ZNF93 ATP13A1 ZNF90 ZNF506 NR2C2AP ENSG00000267481 TMEM161A ZNF66 MAU2 ZNF101
GH19I019774 Promoter/Enhancer 1.5 Ensembl ENCODE 18.5 +45.5 45540 3.2 HDGF ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF766 ZNF207 ZNF143 LINC00663 ZNF56 ZNF506 ZNF14 ZNF101 ATP13A1 ENSG00000267693 ENSG00000267581
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ZNF506 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the ZNF506 gene promoter:

Genomic Locations for ZNF506 Gene

Genomic Locations for ZNF506 Gene
35,913 bases
Minus strand

Genomic View for ZNF506 Gene

Genes around ZNF506 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF506 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF506 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF506 Gene

Proteins for ZNF506 Gene

  • Protein details for ZNF506 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Zinc finger protein 506
    Protein Accession:
    Secondary Accessions:
    • B3KTH6

    Protein attributes for ZNF506 Gene

    444 amino acids
    Molecular mass:
    51537 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for ZNF506 Gene


neXtProt entry for ZNF506 Gene

Post-translational modifications for ZNF506 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ZNF506 Gene

Domains & Families for ZNF506 Gene

Gene Families for ZNF506 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Transcription factors

Suggested Antigen Peptide Sequences for ZNF506 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the krueppel C2H2-type zinc-finger protein family.
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
genes like me logo Genes that share domains with ZNF506: view

Function for ZNF506 Gene

Molecular function for ZNF506 Gene

UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation.

Phenotypes From GWAS Catalog for ZNF506 Gene

Gene Ontology (GO) - Molecular Function for ZNF506 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF506: view

Phenotypes for ZNF506 Gene

genes like me logo Genes that share phenotypes with ZNF506: view

miRNA for ZNF506 Gene

miRTarBase miRNAs that target ZNF506

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ZNF506 Gene

Localization for ZNF506 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF506 Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ZNF506 gene
Compartment Confidence
nucleus 5

Gene Ontology (GO) - Cellular Components for ZNF506 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
GO:0005634 nucleus IEA --
GO:0005730 nucleolus IDA --
genes like me logo Genes that share ontologies with ZNF506: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for ZNF506 Gene

Pathways & Interactions for ZNF506 Gene

SuperPathways for ZNF506 Gene

SuperPathway Contained pathways
1 Gene Expression
genes like me logo Genes that share pathways with ZNF506: view

Pathways by source for ZNF506 Gene

2 Reactome pathways for ZNF506 Gene

Gene Ontology (GO) - Biological Process for ZNF506 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZNF506: view

No data available for SIGNOR curated interactions for ZNF506 Gene

Drugs & Compounds for ZNF506 Gene

No Compound Related Data Available

Transcripts for ZNF506 Gene

Unigene Clusters for ZNF506 Gene

Zinc finger protein 506:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF506 Gene

No ASD Table

Relevant External Links for ZNF506 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for ZNF506 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZNF506 Gene

Protein differential expression in normal tissues from HIPED for ZNF506 Gene

This gene is overexpressed in Heart (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for ZNF506 Gene

Protein tissue co-expression partners for ZNF506 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of ZNF506 Gene:


SOURCE GeneReport for Unigene cluster for ZNF506 Gene:


Evidence on tissue expression from TISSUES for ZNF506 Gene

  • Nervous system(4.4)
genes like me logo Genes that share expression patterns with ZNF506: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF506 Gene

Orthologs for ZNF506 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ZNF506 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia ZNF506 33 34
  • 99.17 (n)
(Monodelphis domestica)
Mammalia -- 34
  • 43 (a)
-- 34
  • 29 (a)
(Bos Taurus)
Mammalia -- 34
  • 41 (a)
(Mus musculus)
Mammalia Zfp386 34
  • 30 (a)
(Canis familiaris)
Mammalia -- 34
  • 29 (a)
(Anolis carolinensis)
Reptilia -- 34
  • 37 (a)
-- 34
  • 30 (a)
-- 34
  • 30 (a)
-- 34
  • 25 (a)
-- 34
  • 23 (a)
-- 34
  • 22 (a)
-- 34
  • 22 (a)
-- 34
  • 22 (a)
Species where no ortholog for ZNF506 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZNF506 Gene

Gene Tree for ZNF506 (if available)
Gene Tree for ZNF506 (if available)

Paralogs for ZNF506 Gene

(534) SIMAP similar genes for ZNF506 Gene using alignment to 8 proteins: Pseudogenes for ZNF506 Gene

genes like me logo Genes that share paralogs with ZNF506: view

Variants for ZNF506 Gene

Sequence variations from dbSNP and Humsavar for ZNF506 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000047772 -- 19,793,149(-) C/T 3_prime_UTR_variant
rs1000127439 -- 19,807,661(-) T/G intron_variant
rs1000170710 -- 19,798,439(-) G/C intron_variant
rs1000221153 -- 19,801,143(-) A/G intron_variant
rs1000276011 -- 19,823,587(-) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ZNF506 Gene

Variant ID Type Subtype PubMed ID
esv2665024 CNV deletion 23128226
esv2669979 CNV deletion 23128226
esv2718296 CNV deletion 23290073
esv3643858 CNV loss 21293372
esv3893168 CNV gain+loss 25118596
nsv1127664 CNV deletion 24896259
nsv1131410 CNV deletion 24896259
nsv458375 CNV gain 19166990
nsv519535 CNV gain 19592680
nsv578798 CNV gain 21841781
nsv578799 CNV gain 21841781
nsv961192 CNV duplication 23825009

Variation tolerance for ZNF506 Gene

Residual Variation Intolerance Score: 40.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.97; 49.49% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for ZNF506 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF506 Gene

Disorders for ZNF506 Gene

Additional Disease Information for ZNF506

No disorders were found for ZNF506 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF506 Gene

Publications for ZNF506 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. PML-associated repressor of transcription (PAROT), a novel KRAB-zinc finger repressor, is regulated through association with PML nuclear bodies. (PMID: 16412420) Fleischer S … Hofmann TG (Experimental cell research 2006) 3 58
  4. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J … Lucas SM (Nature 2004) 4 58
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for ZNF506 Gene

Sources for ZNF506 Gene

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