Aliases for ZNF503-AS1 Gene

Subcategory (RNA class) for ZNF503-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ZNF503-AS1 Gene

  • ZNF503 Antisense RNA 1 2 3 5
  • ZNF503-AS1 2 5 165
  • ZNF503 Antisense RNA 1 (Non-Protein Coding) 2 3
  • NONHSAG006263.2 91
  • HSALNG0078947 164

External Ids for ZNF503-AS1 Gene

Previous GeneCards Identifiers for ZNF503-AS1 Gene

  • GC10P077029
  • GC10P075269

Summaries for ZNF503-AS1 Gene

GeneCards Summary for ZNF503-AS1 Gene

ZNF503-AS1 (ZNF503 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ZNF503-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ZNF503-AS1 Gene

Genomics for ZNF503-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ZNF503-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J075293 Promoter/Enhancer 2.7 UCNEbase EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 621.7 +53.4 53352 4.2 CREB1 PRDM10 ZNF629 ZNF512 LEF1 SOX13 ZNF692 BACH1 LARP7 PRDM1 ZNF503-AS1 KAT6B DUSP13 piR-50968-020 ENSG00000223428 lnc-COMTD1-1 COMTD1 ENSG00000270087 ZNF503
GH10J075240 Enhancer 0.6 ENCODE dbSUPER 600.7 -1.5 -1515 1.2 SPI1 FOSL2 ZNF18 ZNF624 ZNF503-AS1 RPL39P25 HMGA1P5 DUSP29 COMTD1 lnc-COMTD1-6 ZNF503
GH10J075261 Enhancer 1.7 VISTA UCNEbase Ensembl ENCODE dbSUPER 49.3 +20.7 20663 2.8 GATAD2A KDM1A JUND FOXA1 ZIC2 ESR1 CTBP1 HDAC2 ZNF580 ESRRA ZNF503-AS1 HMGA1P5 piR-57460-062 COMTD1 ZNF503
GH10J075276 Promoter/Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas dbSUPER 49.6 +34.1 34084 1.2 ZFX SCRT2 NRF1 MGA NFIC CEBPB KLF1 GABPB1 L3MBTL2 ZNF148 HMGA1P5 lnc-COMTD1-3 ZNF503-AS1 RPL39P25 COMTD1 ZNF503
GH10J075207 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 23.5 -32.0 -32005 6.1 SP1 CREB1 HNRNPL PRDM10 ZNF629 TFE3 LEF1 IKZF1 NFKBIZ ZNF692 VDAC2 KAT6B ZNF503-AS1 COMTD1 HSALNG0078940 DUSP13
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ZNF503-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ZNF503-AS1 Gene

Genomic Locations for ZNF503-AS1 Gene
chr10:75,242,138-75,373,500
(GRCh38/hg38)
Size:
131,363 bases
Orientation:
Plus strand
chr10:77,029,577-77,133,258
(GRCh37/hg19)
Size:
103,682 bases
Orientation:
Plus strand

Genomic View for ZNF503-AS1 Gene

Genes around ZNF503-AS1 on UCSC Golden Path with GeneCards custom track
ZNF503-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ZNF503-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF503-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF503-AS1 Gene

Proteins for ZNF503-AS1 Gene

Post-translational modifications for ZNF503-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZNF503-AS1 Gene

Domains & Families for ZNF503-AS1 Gene

Gene Families for ZNF503-AS1 Gene

genes like me logo Genes that share domains with ZNF503-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ZNF503-AS1 Gene

Function for ZNF503-AS1 Gene

Phenotypes From GWAS Catalog for ZNF503-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNF503-AS1 Gene

Localization for ZNF503-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZNF503-AS1 Gene

Pathways & Interactions for ZNF503-AS1 Gene

PathCards logo

SuperPathways for ZNF503-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ZNF503-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ZNF503-AS1 Gene

Drugs & Compounds for ZNF503-AS1 Gene

No Compound Related Data Available

Transcripts for ZNF503-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ZNF503-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075A5BB_9606 lncRNA 1867 5

HGNC: 27370,

RefSeq: NR_038223,

LncBook: HSALNT0164575,

LNCipedia: ZNF503-AS1:5,

NONCODE: NONHSAT014097.2,

URS000075CA45_9606 lncRNA 1648 4

RefSeq: NR_038226,

LncBook: HSALNT0164576,

LNCipedia: ZNF503-AS1:6,

NONCODE: NONHSAT014098.2,

URS000075D990_9606 lncRNA 1636 4

RefSeq: NR_038225,

LncBook: HSALNT0164577,

LNCipedia: ZNF503-AS1:7,

NONCODE: NONHSAT014099.2,

URS000075D278_9606 lncRNA 1525 4

RefSeq: NR_038224,

LncBook: HSALNT0164578,

LNCipedia: ZNF503-AS1:8,

NONCODE: NONHSAT014100.2,

URS00005B20C7_9606 lncRNA 790 4

Ensembl: ENST00000524517 (view in UCSC) ,

LncBook: HSALNT0164542,

LNCipedia: ZNF503-AS1:1,

NONCODE: NONHSAT014089.2,

ZNF503-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ZNF503-AS1 Gene

4 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF503-AS1 Gene

No ASD Table

Relevant External Links for ZNF503-AS1 Gene

GeneLoc Exon Structure for
ZNF503-AS1

Expression for ZNF503-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ZNF503-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ZNF503-AS1 Gene

This gene is overexpressed in Esophagus - Mucosa (x7.1) and Pancreas (x6.4).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ZNF503-AS1

SOURCE GeneReport for Unigene cluster for ZNF503-AS1 Gene:

Hs.662111
genes like me logo Genes that share expression patterns with ZNF503-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF503-AS1 Gene

Orthologs for ZNF503-AS1 Gene

Evolution for ZNF503-AS1 Gene

ENSEMBL:
Gene Tree for ZNF503-AS1 (if available)
TreeFam:
Gene Tree for ZNF503-AS1 (if available)

No data available for Orthologs for ZNF503-AS1 Gene

Paralogs for ZNF503-AS1 Gene

No data available for Paralogs for ZNF503-AS1 Gene

Variants for ZNF503-AS1 Gene

Additional dbSNP identifiers (rs#s) for ZNF503-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for ZNF503-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv927n100 CNV gain 25217958
dgv928n100 CNV gain 25217958
esv1490079 CNV insertion 17803354
esv2858569 CNV duplication 24192839
esv991439 CNV insertion 20482838
nsv7221 CNV insertion 18451855

Additional Variant Information for ZNF503-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF503-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for ZNF503-AS1 Gene

Disorders for ZNF503-AS1 Gene

No disorders were found for ZNF503-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF503-AS1 Gene

Publications for ZNF503-AS1 Gene

  1. LncRNA ZNF503-AS1 promotes RPE differentiation by downregulating ZNF503 expression. (PMID: 28880276) Chen X … Zhao C (Cell death & disease 2017) 2 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  4. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3

Products for ZNF503-AS1 Gene

Sources for ZNF503-AS1 Gene