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Aliases for ZNF501 Gene

Aliases for ZNF501 Gene

  • Zinc Finger Protein 501 2 3 5
  • Zinc Finger Protein 52 2 3 4
  • ZNF52 3 4
  • ZNF 3

External Ids for ZNF501 Gene

Previous HGNC Symbols for ZNF501 Gene

  • ZNF52

Previous GeneCards Identifiers for ZNF501 Gene

  • GC03P044731
  • GC03P044746
  • GC03P044771
  • GC03P044794
  • GC03P044834
  • GC03P044842
  • GC03P044913
  • GC03P044950
  • GC03P044994

Summaries for ZNF501 Gene

GeneCards Summary for ZNF501 Gene

ZNF501 (Zinc Finger Protein 501) is a Protein Coding gene. Diseases associated with ZNF501 include Split-Hand/Foot Malformation 1. Gene Ontology (GO) annotations related to this gene include DNA binding transcription factor activity. An important paralog of this gene is ZNF79.

UniProtKB/Swiss-Prot for ZNF501 Gene

  • May be involved in transcriptional regulation.

Additional gene information for ZNF501 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF501 Gene

Genomics for ZNF501 Gene

GeneHancer (GH) Regulatory Elements for ZNF501 Gene

Promoters and enhancers for ZNF501 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I044729 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 550.8 +0.1 105 1.4 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 YY1 POLR2B E2F8 ZNF143 LOC105377056 ZNF501 KIAA1143 ZNF852 ZNF35 ZNF502 ZDHHC3 PIR43736
GH03I045687 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 12.2 +962.3 962300 8.2 ZFP64 FEZF1 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 SP3 NFYC SACM1L ZNF502 LIMD1 RN7SL145P RPS24P8 ZNF501 ZDHHC3 LARS2-AS1 SDHDP4 CCR9
GH03I044648 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 12.2 -80.6 -80641 1.7 PKNOX1 ARNT SIN3A IRF4 YY1 ETS1 POLR2B CBX5 E2F8 ELK1 ZNF35 ZNF852 RPS24P8 ZNF501 ZNF197 ZNF502 ZDHHC3 KIAA1143 ENSG00000272077 ENSG00000236869
GH03I044584 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE 10.6 -144.6 -144609 1.7 MXI1 FOXA2 SAP130 ARID4B SIN3A KLF5 ETS1 POLR2A VEZF1 ZNF207 ZNF197 ZNF660 ZNF197-AS1 ZKSCAN7 ZNF501 ZNF35 PIR39553 ENSG00000236869
GH03I044685 Promoter/Enhancer 1.3 Ensembl ENCODE 11.1 -44.0 -43996 1.2 HDGF PKNOX1 RB1 BMI1 ZBTB40 E4F1 ETS1 POLR2A PHF20 ZNF207 ENSG00000236869 LOC101928592 ZNF197 ZNF35 KIAA1143 ZNF852 KIF15 ZNF501 ZNF660 ZNF502
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ZNF501 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the ZNF501 gene promoter:

Genomic Locations for ZNF501 Gene

Genomic Locations for ZNF501 Gene
chr3:44,729,596-44,737,083
(GRCh38/hg38)
Size:
7,488 bases
Orientation:
Plus strand
chr3:44,771,088-44,778,575
(GRCh37/hg19)

Genomic View for ZNF501 Gene

Genes around ZNF501 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF501 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF501 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF501 Gene

Proteins for ZNF501 Gene

  • Protein details for ZNF501 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96CX3-ZN501_HUMAN
    Recommended name:
    Zinc finger protein 501
    Protein Accession:
    Q96CX3
    Secondary Accessions:
    • B4DLY7
    • Q96NU9

    Protein attributes for ZNF501 Gene

    Size:
    271 amino acids
    Molecular mass:
    31179 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for ZNF501 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZNF501 Gene

Post-translational modifications for ZNF501 Gene

No Post-translational modifications

Other Protein References for ZNF501 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ZNF501 Gene

Domains & Families for ZNF501 Gene

Gene Families for ZNF501 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Transcription factors

Protein Domains for ZNF501 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for ZNF501 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96CX3

UniProtKB/Swiss-Prot:

ZN501_HUMAN :
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
genes like me logo Genes that share domains with ZNF501: view

Function for ZNF501 Gene

Molecular function for ZNF501 Gene

UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation.

Phenotypes From GWAS Catalog for ZNF501 Gene

Gene Ontology (GO) - Molecular Function for ZNF501 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0003700 DNA binding transcription factor activity IBA --
GO:0005515 protein binding IPI 25556234
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF501: view
genes like me logo Genes that share phenotypes with ZNF501: view

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNF501 Gene

Localization for ZNF501 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF501 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ZNF501 gene
Compartment Confidence
nucleus 5
cytosol 2

Subcellular locations from the

Human Protein Atlas (HPA)
  • Endoplasmic reticulum (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for ZNF501 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZNF501: view

Pathways & Interactions for ZNF501 Gene

SuperPathways for ZNF501 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ZNF501 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IBA --
genes like me logo Genes that share ontologies with ZNF501: view

No data available for Pathways by source and SIGNOR curated interactions for ZNF501 Gene

Drugs & Compounds for ZNF501 Gene

No Compound Related Data Available

Transcripts for ZNF501 Gene

Unigene Clusters for ZNF501 Gene

Zinc finger protein 501:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF501 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b ^ 3a · 3b
SP1: - -
SP2: -
SP3: -

Relevant External Links for ZNF501 Gene

GeneLoc Exon Structure for
ZNF501
ECgene alternative splicing isoforms for
ZNF501

Expression for ZNF501 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZNF501 Gene

Protein differential expression in normal tissues from HIPED for ZNF501 Gene

This gene is overexpressed in Platelet (28.3), CD8 Tcells (25.1), and Testis (15.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for ZNF501 Gene



Protein tissue co-expression partners for ZNF501 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of ZNF501 Gene:

ZNF501

SOURCE GeneReport for Unigene cluster for ZNF501 Gene:

Hs.401045

Evidence on tissue expression from TISSUES for ZNF501 Gene

  • Nervous system(4.3)
  • Adrenal gland(4.1)
genes like me logo Genes that share expression patterns with ZNF501: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF501 Gene

Orthologs for ZNF501 Gene

This gene was present in the common ancestor of animals.

Orthologs for ZNF501 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZNF501 33 34
  • 99.75 (n)
dog
(Canis familiaris)
Mammalia ZNF501 34
  • 92 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii si:dkey-191j3.3 34
  • 44 (a)
ManyToMany
zgc:173575 34
  • 41 (a)
ManyToMany
si:ch73-92e7.6 34
  • 33 (a)
ManyToMany
si:dkey-20i20.10 34
  • 33 (a)
ManyToMany
si:dkey-20i20.8 34
  • 33 (a)
ManyToMany
si:dkey-20i20.3 34
  • 32 (a)
ManyToMany
si:dkey-20i20.7 34
  • 29 (a)
ManyToMany
si:dkey-20i20.9 34
  • 29 (a)
ManyToMany
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP006701 33
  • 54.52 (n)
Species where no ortholog for ZNF501 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ZNF501 Gene

ENSEMBL:
Gene Tree for ZNF501 (if available)
TreeFam:
Gene Tree for ZNF501 (if available)

Paralogs for ZNF501 Gene

(573) SIMAP similar genes for ZNF501 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with ZNF501: view

Variants for ZNF501 Gene

Sequence variations from dbSNP and Humsavar for ZNF501 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000138254 -- 44,730,570(+) C/T intron_variant
rs1001049637 -- 44,731,680(+) T/G intron_variant
rs1001092306 -- 44,731,641(+) G/T intron_variant
rs1001544819 -- 44,732,051(+) G/A intron_variant
rs1001656802 -- 44,729,854(+) A/G 5_prime_UTR_variant, intron_variant

Variation tolerance for ZNF501 Gene

Residual Variation Intolerance Score: 90.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.82; 47.71% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for ZNF501 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF501

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for ZNF501 Gene

Disorders for ZNF501 Gene

MalaCards: The human disease database

(1) MalaCards diseases for ZNF501 Gene - From: DISEASES

Disorder Aliases PubMed IDs
split-hand/foot malformation 1
  • shfm1
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for ZNF501

genes like me logo Genes that share disorders with ZNF501: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ZNF501 Gene

Publications for ZNF501 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  3. Clustering of C2-H2 zinc finger motif sequences within telomeric and fragile site regions of human chromosomes. (PMID: 1505991) Lichter P … Ward DC (Genomics 1992) 2 3 58
  4. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 58
  5. New host factors important for respiratory syncytial virus (RSV) replication revealed by a novel microfluidics screen for interactors of matrix (M) protein. (PMID: 25556234) Kipper S … Bajorek M (Molecular & cellular proteomics : MCP 2015) 3 58

Products for ZNF501 Gene

Sources for ZNF501 Gene

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