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ZNF485 Gene(Protein Coding)

Zinc Finger Protein 485

GCID:
GC10P043606
GIFtS:
40
Genes Participants
UDN Logo

Aliases for ZNF485 Gene

Aliases for ZNF485 Gene

  • Zinc Finger Protein 485 2 3 5

External Ids for ZNF485 Gene

Previous GeneCards Identifiers for ZNF485 Gene

  • GC10P043256
  • GC10P043421
  • GC10P044101
  • GC10P040628

Summaries for ZNF485 Gene

GeneCards Summary for ZNF485 Gene

ZNF485 (Zinc Finger Protein 485) is a Protein Coding gene. Among its related pathways are Gene Expression. Gene Ontology (GO) annotations related to this gene include nucleic acid binding. An important paralog of this gene is ZNF34.

UniProtKB/Swiss-Prot for ZNF485 Gene

  • May be involved in transcriptional regulation.

Additional gene information for ZNF485 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF485 Gene

Genomics for ZNF485 Gene

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  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for ZNF485 Gene

Promoters and enhancers for ZNF485 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH10I043605 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 550.8 +0.3 255 1.7 PKNOX1 ARID4B SIN3A DMAP1 ZNF2 IRF4 ZNF48 ETS1 POLR2B GLIS2 CAP1P2 ZNF485 ZNF32 PIR33135 GC10M043601
GH10I043604 Enhancer 0.3 FANTOM5 550.8 -1.2 -1234 0.5 CAP1P2 ZNF485 ZNF239 ENSG00000229116 CSGALNACT2 GC10M043601
GH10I043623 Enhancer 0.8 Ensembl ENCODE 0.4 +17.1 17094 0.6 IRF2 NFATC3 MAFG ZBTB40 ZNF507 ZNF318 NFE2 PRDM1 PIR33135 ENSG00000228426 ZNF485 GC10M043601
GH10I043613 Enhancer 0.2 ENCODE 0.4 +7.4 7422 1.3 ZNF32 ZNF32-AS2 ZNF239 ENSG00000229116 ZNF485 PIR33135 GC10M043601
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ZNF485 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the ZNF485 gene promoter:

Genomic Locations for ZNF485 Gene

Genomic Locations for ZNF485 Gene
chr10:43,606,407-43,617,904
(GRCh38/hg38)
Size:
11,498 bases
Orientation:
Plus strand
chr10:44,101,855-44,113,352
(GRCh37/hg19)

Genomic View for ZNF485 Gene

Genes around ZNF485 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF485 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF485 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for ZNF485 Gene

Proteins for ZNF485 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for ZNF485 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NCK3-ZN485_HUMAN
    Recommended name:
    Zinc finger protein 485
    Protein Accession:
    Q8NCK3
    Secondary Accessions:
    • B4DSE6
    • Q96CL0

    Protein attributes for ZNF485 Gene

    Size:
    441 amino acids
    Molecular mass:
    50280 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH14161.1; Type=Frameshift; Positions=3; Evidence={ECO:0000305}; Sequence=CAH73487.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for ZNF485 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZNF485 Gene

Protein Expression for ZNF485 Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for ZNF485 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZNF485 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ZNF485 Gene

Domains & Families for ZNF485 Gene

Gene Families for ZNF485 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Transcription factors

Protein Domains for ZNF485 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for ZNF485 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8NCK3

UniProtKB/Swiss-Prot:

ZN485_HUMAN :
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
genes like me logo Genes that share domains with ZNF485: view

Function for ZNF485 Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Molecular function for ZNF485 Gene

UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation.

Gene Ontology (GO) - Molecular Function for ZNF485 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF485: view
genes like me logo Genes that share phenotypes with ZNF485: view

Animal Model Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ZNF485 Gene

Localization for ZNF485 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF485 Gene

Nucleus.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ZNF485 gene
Compartment Confidence
nucleus 5
cytosol 2

Gene Ontology (GO) - Cellular Components for ZNF485 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZNF485: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for ZNF485 Gene

Pathways & Interactions for ZNF485 Gene

SuperPathways for ZNF485 Gene

PathCards logo More details on SuperPathways for ZNF485
SuperPathway Contained pathways
1 Gene Expression
Gene Expression
.48
Generic Transcription Pathway
.48
genes like me logo Genes that share pathways with ZNF485: view

Pathways by source for ZNF485 Gene

2 Reactome pathways for ZNF485 Gene

Interacting Proteins for ZNF485 Gene

STRING Interaction Network Preview (showing 5 interactants - click image to see 25)
http://version10.5.string-db.org/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000354694%0d%0a9606.ENSP00000369131%0d%0a9606.ENSP00000353622%0d%0a9606.ENSP00000367705%0d%0a9606.ENSP00000264705%0d%0a9606.ENSP00000276072%0d%0a
Selected Interacting proteins: ENSP00000354694 for ZNF485 Gene via STRING

Gene Ontology (GO) - Biological Process for ZNF485 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZNF485: view

No data available for SIGNOR curated interactions for ZNF485 Gene

Drugs & Compounds for ZNF485 Gene

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  1. Drug
No Compound Related Data Available

Transcripts for ZNF485 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for ZNF485 Gene

(6) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(22) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZNF485 Gene

Zinc finger protein 485:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF485 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b ^ 3 ^ 4 ^ 5a · 5b
SP1: - -
SP2: -
SP3: -

Relevant External Links for ZNF485 Gene

GeneLoc Exon Structure for
ZNF485
ECgene alternative splicing isoforms for
ZNF485

Expression for ZNF485 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZNF485 Gene

mRNA expression in normal human tissues for ZNF485 Gene
mRNA expression by GTEx for ZNF485 GenemRNA expression by BioGPS for ZNF485 Gene

Protein differential expression in normal tissues from HIPED for ZNF485 Gene

This gene is overexpressed in Plasma (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for ZNF485 Gene



Protein tissue co-expression partners for ZNF485 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of ZNF485 Gene:

ZNF485

SOURCE GeneReport for Unigene cluster for ZNF485 Gene:

Hs.147440

Evidence on tissue expression from TISSUES for ZNF485 Gene

  • Nervous system(4.3)
  • Skin(4.1)
genes like me logo Genes that share expression patterns with ZNF485: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF485 Gene

Orthologs for ZNF485 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZNF485 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia ZNF485 33 34
  • 99.7 (n)
dog
(Canis familiaris)
 Mammalia ZNF485 33 34
  • 88.31 (n)
Species where no ortholog for ZNF485 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZNF485 Gene

ENSEMBL:
Gene Tree for ZNF485 (if available)
TreeFam:
Gene Tree for ZNF485 (if available)

Paralogs for ZNF485 Gene

Paralogs for ZNF485 Gene

(553) SIMAP similar genes for ZNF485 Gene using alignment to 3 proteins:

Pseudogenes.org Pseudogenes for ZNF485 Gene

genes like me logo Genes that share paralogs with ZNF485: view

Variants for ZNF485 Gene

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  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for ZNF485 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000095131 -- 43,615,564(+) G/A/C intron_variant
rs1000117163 -- 43,608,571(+) C/T 5_prime_UTR_variant, intron_variant
rs1000182789 -- 43,610,126(+) A/G/T intron_variant
rs1000279872 -- 43,612,433(+) T/C intron_variant
rs1000419870 -- 43,618,465(+) C/G/T 3_prime_UTR_variant, genic_downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ZNF485 Gene

Variant ID Type Subtype PubMed ID
nsv522992 CNV loss 19592680
nsv947897 CNV duplication 23825009

Variation tolerance for ZNF485 Gene

Residual Variation Intolerance Score: 36.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.74; 66.43% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for ZNF485 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF485

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF485 Gene

Disorders for ZNF485 Gene

Additional Disease Information for ZNF485

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for ZNF485 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF485 Gene

Publications for ZNF485 Gene

  1. A scan of chromosome 10 identifies a novel locus showing strong association with late-onset Alzheimer disease. (PMID: 16385451) Grupe A … Goate A (American journal of human genetics 2006) 3 44 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  3. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P … Rogers J (Nature 2004) 3 4 58
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

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Sources for ZNF485 Gene

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