Aliases for ZNF407-AS1 Gene

Data sources for ZNF407-AS1 Gene:

Subcategory (RNA class) for ZNF407-AS1 Gene

lncRNA

Aliases for ZNF407-AS1 Gene

External Ids for ZNF407-AS1 Gene

Previous HGNC Symbols for ZNF407-AS1 Gene

  • LINC00909

Summaries for ZNF407-AS1 Gene

GeneCards Summary for ZNF407-AS1 Gene

ZNF407-AS1 (ZNF407 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ZNF407-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ZNF407-AS1 Gene

Genomics for ZNF407-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ZNF407-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J074595 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 272.6 +1.6 1557 4.5 TBP SP1 CEBPA NR2C1 SMAD5 ETS1 ZNF217 ELF1 ZIC2 THAP11 ZNF407-AS1 ZNF407 piR-56640-011 lnc-ZNF407-1 ZADH2
GH18J074630 Promoter/Enhancer 0.9 Ensembl ENCODE 10.4 -33.4 -33382 3.1 MAFF ZNF316 NFE2 MAFK MAFG BHLHE40 NFE2L2 BACH1 CEBPB EMSY ZNF407-AS1 lnc-FAM69C-4 lnc-CNDP1-5 ZNF407 ZADH2
GH18J074591 Enhancer 0.3 FANTOM5 21.9 +7.8 7802 0.4 MAFK ZNF407 lnc-ZNF407-1 ZNF407-AS1 CNDP2 CNDP1 ZADH2
GH18J074733 Enhancer 1 Ensembl ENCODE 6.9 -134.9 -134906 2.1 FEZF1 CEBPA HOMEZ KDM6A FOXA2 SAP130 RXRA RARA TEAD3 DMAP1 ZNF407-AS1 lnc-CNDP1-7 lnc-CNDP1-6 ZNF407 ZADH2
GH18J074620 Enhancer 0.7 Ensembl ENCODE 9.7 -23.8 -23816 4.2 CTCF RAD21 STAT5A POU5F1 ZSCAN4 ZNF777 OVOL3 PRDM1 lnc-FAM69C-4 ZNF407-AS1 ZNF407 lnc-CNDP1-5 ZADH2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ZNF407-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ZNF407-AS1 Gene

Latest Assembly
chr18:74,583,479-74,598,885
(GRCh38/hg38)
Size:
15,407 bases
Orientation:
Minus strand

Previous Assembly
chr18:72,259,010-72,265,071
(GRCh37/hg19 by Entrez Gene)
Size:
6,062 bases
Orientation:
Minus strand

chr18:72,259,010-72,265,744
(GRCh37/hg19 by Ensembl)
Size:
6,735 bases
Orientation:
Minus strand

Genomic View for ZNF407-AS1 Gene

Genes around ZNF407-AS1 on UCSC Golden Path with GeneCards custom track
ZNF407-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ZNF407-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF407-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF407-AS1 Gene

Proteins for ZNF407-AS1 Gene

Post-translational modifications for ZNF407-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZNF407-AS1 Gene

Domains & Families for ZNF407-AS1 Gene

Gene Families for ZNF407-AS1 Gene

genes like me logo Genes that share domains with ZNF407-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ZNF407-AS1 Gene

Function for ZNF407-AS1 Gene

Phenotypes From GWAS Catalog for ZNF407-AS1 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNF407-AS1 Gene

Localization for ZNF407-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZNF407-AS1 Gene

Pathways & Interactions for ZNF407-AS1 Gene

PathCards logo

SuperPathways for ZNF407-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ZNF407-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ZNF407-AS1 Gene

Drugs & Compounds for ZNF407-AS1 Gene

No Compound Related Data Available

Transcripts for ZNF407-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ZNF407-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003C73DF_9606 lncRNA 951 4

Ensembl: ENST00000577806 (view in UCSC) ,

LncBook: HSALNT0253124,

LNCipedia: LINC00909:7,

NONCODE: NONHSAT059881.2,

URS0000379FFD_9606 lncRNA 756 4

Ensembl: ENST00000585279 (view in UCSC) ,

LncBook: HSALNT0253123,

LNCipedia: LINC00909:6,

NONCODE: NONHSAT059880.2,

URS000075BFAB_9606 lncRNA 3474 3

RefSeq: NR_024484,

LNCipedia: LINC00909:15, LINC00909:4,

NONCODE: NONHSAT059878.2,

URS000050ED1D_9606 lncRNA 423 3

Ensembl: ENST00000581192 (view in UCSC) ,

LNCipedia: LINC00909:1,

NONCODE: NONHSAT059882.2,

URS00001E78DF_9606 lncRNA 3463 2

Ensembl: ENST00000580048 (view in UCSC) ,

LNCipedia: LINC00909:5,

ZNF407-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ZNF407-AS1 Gene

1 REFSEQ mRNAs :
6 NCBI additional mRNA sequence :

CRISPR products for research

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ZNF407-AS1

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF407-AS1 Gene

No ASD Table

Relevant External Links for ZNF407-AS1 Gene

GeneLoc Exon Structure for
ZNF407-AS1

Expression for ZNF407-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ZNF407-AS1

No Expression Related Data Available

Primer products for research

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF407-AS1 Gene

Orthologs for ZNF407-AS1 Gene

Evolution for ZNF407-AS1 Gene

ENSEMBL:
Gene Tree for ZNF407-AS1 (if available)
TreeFam:
Gene Tree for ZNF407-AS1 (if available)

No data available for Orthologs for ZNF407-AS1 Gene

Paralogs for ZNF407-AS1 Gene

No data available for Paralogs for ZNF407-AS1 Gene

Variants for ZNF407-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for ZNF407-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for ZNF407-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3643117 CNV loss 21293372
esv3643118 CNV gain 21293372
nsv1057441 CNV gain 25217958
nsv1134732 CNV deletion 24896259
nsv577656 CNV gain 21841781

Additional Variant Information for ZNF407-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF407-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for ZNF407-AS1 Gene

Disorders for ZNF407-AS1 Gene

Additional Disease Information for ZNF407-AS1

No disorders were found for ZNF407-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF407-AS1 Gene

Publications for ZNF407-AS1 Gene

  1. LINC00909 promotes tumor progression in human glioma through regulation of miR-194/MUC1-C axis. (PMID: 31132669) Liu Z … Hu G (Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 2019) 2 3
  2. CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells. (PMID: 27980086) Liu SJ … Lim DA (Science (New York, N.Y.) 2017) 2 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for ZNF407-AS1 Gene

Sources for ZNF407-AS1 Gene