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Aliases for ZNF407-AS1 Gene
Data sources for ZNF407-AS1 Gene:
Subcategory (RNA class) for ZNF407-AS1 Gene
lncRNA
Aliases for ZNF407-AS1 Gene
- ZNF407 Antisense RNA 1 (HGNC, NCBI Entrez Gene)
- Long Intergenic Non-Protein Coding RNA 909 (HGNC, NCBI Entrez Gene, Ensembl)
- LINC00909 (NCBI Entrez Gene, Ensembl, LNCipedia)
- NONHSAG024171.2 (NONCODE)
- HSALNG0122453 (LncBook)
External Ids for ZNF407-AS1 Gene
- HGNC: 44331
- NCBI Entrez Gene: 400657
- Ensembl: ENSG00000264247
Previous HGNC Symbols for ZNF407-AS1 Gene
- LINC00909
Summaries for ZNF407-AS1 Gene
GeneCards Summary for ZNF407-AS1 Gene
ZNF407-AS1 (ZNF407 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for ZNF407-AS1 Gene
- HGNC (44331)
- NCBI Entrez Gene (400657)
- Ensembl (ENSG00000264247)
- Open Targets Platform(ENSG00000264247)
- Search for ZNF407-AS1 at DataMed
- Search for ZNF407-AS1 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ZNF407-AS1 Gene
Genomics for ZNF407-AS1 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for ZNF407-AS1 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH18J074595 | Promoter/Enhancer | 2 | EPDnew Ensembl ENCODE CraniofacialAtlas | 272.6 | +1.6 | 1557 | 4.5 | TBP SP1 CEBPA NR2C1 SMAD5 ETS1 ZNF217 ELF1 ZIC2 THAP11 | ZNF407-AS1 ZNF407 piR-56640-011 lnc-ZNF407-1 ZADH2 | |
| GH18J074630 | Promoter/Enhancer | 0.9 | Ensembl ENCODE | 10.4 | -33.4 | -33382 | 3.1 | MAFF ZNF316 NFE2 MAFK MAFG BHLHE40 NFE2L2 BACH1 CEBPB EMSY | ZNF407-AS1 lnc-FAM69C-4 lnc-CNDP1-5 ZNF407 ZADH2 | |
| GH18J074591 | Enhancer | 0.3 | FANTOM5 | 21.9 | +7.8 | 7802 | 0.4 | MAFK | ZNF407 lnc-ZNF407-1 ZNF407-AS1 CNDP2 CNDP1 ZADH2 | |
| GH18J074733 | Enhancer | 1 | Ensembl ENCODE | 6.9 | -134.9 | -134906 | 2.1 | FEZF1 CEBPA HOMEZ KDM6A FOXA2 SAP130 RXRA RARA TEAD3 DMAP1 | ZNF407-AS1 lnc-CNDP1-7 lnc-CNDP1-6 ZNF407 ZADH2 | |
| GH18J074620 | Enhancer | 0.7 | Ensembl ENCODE | 9.7 | -23.8 | -23816 | 4.2 | CTCF RAD21 STAT5A POU5F1 ZSCAN4 ZNF777 OVOL3 PRDM1 | lnc-FAM69C-4 ZNF407-AS1 ZNF407 lnc-CNDP1-5 ZADH2 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around ZNF407-AS1 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for ZNF407-AS1 Gene
Latest Assembly
- chr18:74,583,479-74,598,885
- (GRCh38/hg38)
- Size:
- 15,407 bases
- Orientation:
- Minus strand
Previous Assembly
- chr18:72,259,010-72,265,071
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 6,062 bases
- Orientation:
- Minus strand
- chr18:72,259,010-72,265,744
- (GRCh37/hg19 by Ensembl)
- Size:
- 6,735 bases
- Orientation:
- Minus strand
Genomic View for ZNF407-AS1 Gene
Genes around ZNF407-AS1 on UCSC Golden Path with GeneCards custom track
ZNF407-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 18q22.3 by HGNC
- 18q22.3 by Entrez Gene
- 18q22.3 by Ensembl
ZNF407-AS1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for ZNF407-AS1 Gene
Proteins for ZNF407-AS1 Gene
Post-translational modifications for ZNF407-AS1 Gene
No Post-translational modifications
No data available for DME Specific Peptides for ZNF407-AS1 Gene
Domains & Families for ZNF407-AS1 Gene
Gene Families for ZNF407-AS1 Gene
- HGNC:
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ZNF407-AS1 Gene
Function for ZNF407-AS1 Gene
Phenotypes From GWAS Catalog for ZNF407-AS1 Gene
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for ZNF407-AS1 - Starting at $85 >
- * ZNF407-AS1 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
-
OriGene CRISPR knockouts for ZNF407-AS1
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Inhibitory RNAs for research
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Clone products for research
- Applied Biological Materials (abm): Clones for ZNF407-AS1 - Starting at $45 >
- * ZNF407-AS1 as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Retro- | Protein Vector - Browse All
- * Viral Packaging Services and High Titer Production Services also available.
-
OriGene ORF clones in human for ZNF407-AS1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for ZNF407-AS1
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNF407-AS1 Gene
Localization for ZNF407-AS1 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZNF407-AS1 Gene
Transcripts for ZNF407-AS1 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for ZNF407-AS1 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00003C73DF_9606 | lncRNA | 951 | 4 |
Ensembl: ENST00000577806 (view in UCSC) , LncBook: HSALNT0253124, LNCipedia: LINC00909:7, NONCODE: NONHSAT059881.2, |
| URS0000379FFD_9606 | lncRNA | 756 | 4 |
Ensembl: ENST00000585279 (view in UCSC) , LncBook: HSALNT0253123, LNCipedia: LINC00909:6, NONCODE: NONHSAT059880.2, |
| URS000075BFAB_9606 | lncRNA | 3474 | 3 |
RefSeq: NR_024484, LNCipedia: LINC00909:15, LINC00909:4, NONCODE: NONHSAT059878.2, |
| URS000050ED1D_9606 | lncRNA | 423 | 3 |
Ensembl: ENST00000581192 (view in UCSC) , LNCipedia: LINC00909:1, NONCODE: NONHSAT059882.2, |
| URS00001E78DF_9606 | lncRNA | 3463 | 2 |
Ensembl: ENST00000580048 (view in UCSC) , LNCipedia: LINC00909:5, |
ZNF407-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for ZNF407-AS1 Gene
- 1 REFSEQ mRNAs :
- 6 NCBI additional mRNA sequence :
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for ZNF407-AS1 - Starting at $85 >
- * ZNF407-AS1 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
-
OriGene CRISPR knockouts for ZNF407-AS1
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for ZNF407-AS1
Inhibitory RNAs for research
- Origene shrna, sirna, and RNAi products in human, mouse, rat for ZNF407-AS1
- Browse OriGene Inhibitory RNA Products For ZNF407-AS1
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ZNF407-AS1
Clone products for research
- Applied Biological Materials (abm): Clones for ZNF407-AS1 - Starting at $45 >
- * ZNF407-AS1 as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Retro- | Protein Vector - Browse All
- * Viral Packaging Services and High Titer Production Services also available.
-
OriGene ORF clones in human for ZNF407-AS1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for ZNF407-AS1
Relevant External Links for ZNF407-AS1 Gene
- GeneLoc Exon Structure for
- ZNF407-AS1
Expression for ZNF407-AS1 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ZNF407-AS1
No Expression Related Data Available
Primer products for research
-
OriGene qPCR primer pairs for ZNF407-AS1
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF407-AS1 Gene
Orthologs for ZNF407-AS1 Gene
No data available for Orthologs for ZNF407-AS1 Gene
Paralogs for ZNF407-AS1 Gene
No data available for Paralogs for ZNF407-AS1 Gene
Variants for ZNF407-AS1 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv3643117 | CNV | loss | 21293372 |
| esv3643118 | CNV | gain | 21293372 |
| nsv1057441 | CNV | gain | 25217958 |
| nsv1134732 | CNV | deletion | 24896259 |
| nsv577656 | CNV | gain | 21841781 |
Additional Variant Information for ZNF407-AS1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- ZNF407-AS1
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for ZNF407-AS1 Gene
Disorders for ZNF407-AS1 Gene
Additional Disease Information for ZNF407-AS1
- Atlas
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
- Open Targets Platform
- Open Targets Platform
No disorders were found for ZNF407-AS1 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF407-AS1 Gene
Publications for ZNF407-AS1 Gene
- LINC00909 promotes tumor progression in human glioma through regulation of miR-194/MUC1-C axis. (PMID: 31132669) Liu Z … Hu G (Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 2019) 2 3
- CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells. (PMID: 27980086) Liu SJ … Lim DA (Science (New York, N.Y.) 2017) 2 3
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
Products for ZNF407-AS1 Gene
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- Custom Assay Services
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- Origene shrna, sirna, and RNAi products in human, mouse, rat for ZNF407-AS1
- Browse OriGene Inhibitory RNA Products For ZNF407-AS1
- OriGene qPCR primer pairs for ZNF407-AS1
- OriGene CRISPR knockouts for ZNF407-AS1
- OriGene ORF clones in human for ZNF407-AS1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For ZNF407-AS1
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- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Novus Biologicals lysates for ZNF407-AS1
- Browse Antibodies
- Browse Peptides and Proteins
- Browse Lysates
- Browse ELISA Kits
- antibodies-online: Search results for available LOC400657 related products ranked by validation data
- antibodies-online: Search results for available LOC400657 related products ranked by validation data
- antibodies-online: Search results for available LOC400657 related products ranked by validation data
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for ZNF407-AS1
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for ZNF407-AS1
- Search GeneCopoeia for miRNA 3'UTR Target clone products for ZNF407-AS1
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ZNF407-AS1
Sources for ZNF407-AS1 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB