Aliases for ZNF350-AS1 Gene

Data sources for ZNF350-AS1 Gene:

Subcategory (RNA class) for ZNF350-AS1 Gene

lncRNA

Aliases for ZNF350-AS1 Gene

External Ids for ZNF350-AS1 Gene

Previous HGNC Symbols for ZNF350-AS1 Gene

  • HCCAT3

Summaries for ZNF350-AS1 Gene

GeneCards Summary for ZNF350-AS1 Gene

ZNF350-AS1 (ZNF350 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ZNF350-AS1 include Hepatocellular Carcinoma.

Additional gene information for ZNF350-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ZNF350-AS1 Gene

Genomics for ZNF350-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ZNF350-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ZNF350-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ZNF350-AS1 Gene

Latest Assembly
chr19:51,949,133-51,982,588
(GRCh38/hg38)
Size:
33,456 bases
Orientation:
Plus strand

Previous Assembly
chr19:52,452,387-52,484,620
(GRCh37/hg19 by Entrez Gene)
Size:
32,234 bases
Orientation:
Plus strand

chr19:52,452,387-52,484,620
(GRCh37/hg19 by Ensembl)
Size:
32,234 bases
Orientation:
Plus strand

Genomic View for ZNF350-AS1 Gene

Genes around ZNF350-AS1 on UCSC Golden Path with GeneCards custom track
ZNF350-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ZNF350-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF350-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF350-AS1 Gene

Proteins for ZNF350-AS1 Gene

Post-translational modifications for ZNF350-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZNF350-AS1 Gene

Domains & Families for ZNF350-AS1 Gene

Gene Families for ZNF350-AS1 Gene

genes like me logo Genes that share domains with ZNF350-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ZNF350-AS1 Gene

Function for ZNF350-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNF350-AS1 Gene

Localization for ZNF350-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZNF350-AS1 Gene

Pathways & Interactions for ZNF350-AS1 Gene

PathCards logo

SuperPathways for ZNF350-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ZNF350-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ZNF350-AS1 Gene

Drugs & Compounds for ZNF350-AS1 Gene

No Compound Related Data Available

Transcripts for ZNF350-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ZNF350-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000043183D_9606 lncRNA 579 4

Ensembl: ENST00000600253 (view in UCSC) ,

LncBook: HSALNT0261817,

LNCipedia: ZNF350-AS1:1,

NONCODE: NONHSAT067497.2,

URS000075DEC7_9606 lncRNA 729 3

RefSeq: NR_103847,

LncBook: HSALNT0261818,

LNCipedia: ZNF350-AS1:2,

URS0000EED155_9606 lncRNA 4562 1

Ensembl: ENST00000658402 (view in UCSC) ,

URS0000EECDE9_9606 lncRNA 2645 1

Ensembl: ENST00000661211 (view in UCSC) ,

URS0000EEB3BC_9606 lncRNA 701 1

Ensembl: ENST00000595010 (view in UCSC) ,

ZNF350-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ZNF350-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF350-AS1 Gene

No ASD Table

Relevant External Links for ZNF350-AS1 Gene

GeneLoc Exon Structure for
ZNF350-AS1

Expression for ZNF350-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ZNF350-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ZNF350-AS1

genes like me logo Genes that share expression patterns with ZNF350-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF350-AS1 Gene

Orthologs for ZNF350-AS1 Gene

Evolution for ZNF350-AS1 Gene

ENSEMBL:
Gene Tree for ZNF350-AS1 (if available)
TreeFam:
Gene Tree for ZNF350-AS1 (if available)

No data available for Orthologs for ZNF350-AS1 Gene

Paralogs for ZNF350-AS1 Gene

No data available for Paralogs for ZNF350-AS1 Gene

Variants for ZNF350-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for ZNF350-AS1 Gene

SNP ID Clinical significance and condition Chr 19 pos Variation AA Info Type
rs115151289 Benign: not provided 51,965,074(+) G/A
NM_021632.4(ZNF350):c.1379C>T (p.Ala460Val)
MISSENSE

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for ZNF350-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for ZNF350-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1067e212 CNV gain 25503493
dgv143e55 CNV gain 17911159
dgv3626n100 CNV gain 25217958
dgv425n27 CNV gain 19166990
dgv6523n54 CNV gain 21841781
esv2242567 CNV deletion 18987734
esv2718779 CNV deletion 23290073
esv2758767 CNV gain+loss 17122850
esv3644680 CNV gain 21293372
nsv1125524 CNV deletion 24896259
nsv1140251 OTHER inversion 24896259
nsv525259 CNV loss 19592680
nsv580001 CNV gain 21841781
nsv580006 CNV loss 21841781
nsv833872 CNV loss 17160897

Additional Variant Information for ZNF350-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF350-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ZNF350-AS1 Gene

Disorders for ZNF350-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for ZNF350-AS1 Gene - From: LNC and GCD

Disorder Aliases PubMed IDs
hepatocellular carcinoma
  • hcc
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for ZNF350-AS1

genes like me logo Genes that share disorders with ZNF350-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ZNF350-AS1 Gene

Publications for ZNF350-AS1 Gene

  1. Long noncoding RNA high expression in hepatocellular carcinoma facilitates tumor growth through enhancer of zeste homolog 2 in humans. (PMID: 21769904) Yang F … Sun SH (Hepatology (Baltimore, Md.) 2011) 74
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for ZNF350-AS1 Gene

Sources for ZNF350-AS1 Gene