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Aliases for ZNF346-IT1 Gene

Subcategory (RNA class) for ZNF346-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ZNF346-IT1 Gene

  • ZNF346 Intronic Transcript 1 2 3 5
  • ZNF346 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for ZNF346-IT1 Gene

Previous GeneCards Identifiers for ZNF346-IT1 Gene

  • GC00U933169
  • GC05P176479

Summaries for ZNF346-IT1 Gene

GeneCards Summary for ZNF346-IT1 Gene

ZNF346-IT1 (ZNF346 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ZNF346-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF346-IT1 Gene

Genomics for ZNF346-IT1 Gene

GeneHancer (GH) Regulatory Elements for ZNF346-IT1 Gene

Promoters and enhancers for ZNF346-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I177402 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 41 +351.9 351941 3.1 HDGF SMAD1 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 POLR2B CBX5 GRK6 ZNF346 ENSG00000247679 LOC202181 FAF2 ZNF346-IT1 LOC105377750 NSD1 FAM193B SUDS3P1
GH05I177085 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE 21 +36.5 36475 5.2 HDGF FOXA2 MLX ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 E2F8 FGFR4 ZNF346-IT1 FAF2 ENSG00000247679 ENSG00000250909 NSD1 ENSG00000251414 LOC202181 FAM193B ZNF346
GH05I177004 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 20.3 -45.5 -45492 2.7 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF213 ZNF207 ZNF143 UIMC1 FAF2 ENSG00000250909 ENSG00000251414 NSD1 FAM193B ENSG00000247679 ZNF346 LOC202181 ZNF346-IT1
GH05I177425 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 15.5 +377.7 377658 8.6 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 GRK6 NSD1 FAF2 UIMC1 DOK3 ENSG00000247679 LOC202181 ZNF346-IT1 PFN3 FAM193B
GH05I177453 Enhancer 1.5 Ensembl ENCODE dbSUPER 23.3 +405.2 405151 6.9 CLOCK MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 PIR32965 ZNF346 ZNF346-IT1 NSD1 RMND5B UIMC1 ENSG00000247679 SLC34A1 F12 GRK6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ZNF346-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ZNF346-IT1 Gene

Genomic Locations for ZNF346-IT1 Gene
chr5:177,051,714-177,052,963
(GRCh38/hg38)
Size:
1,250 bases
Orientation:
Plus strand
chr5:176,478,715-176,479,964
(GRCh37/hg19)

Genomic View for ZNF346-IT1 Gene

Genes around ZNF346-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF346-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF346-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ZNF346-IT1 Gene

Proteins for ZNF346-IT1 Gene

Post-translational modifications for ZNF346-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZNF346-IT1 Gene

Domains & Families for ZNF346-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZNF346-IT1 Gene

Function for ZNF346-IT1 Gene

Phenotypes From GWAS Catalog for ZNF346-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNF346-IT1 Gene

Localization for ZNF346-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZNF346-IT1 Gene

Pathways & Interactions for ZNF346-IT1 Gene

SuperPathways for ZNF346-IT1 Gene

No Data Available

Interacting Proteins for ZNF346-IT1 Gene

Gene Ontology (GO) - Biological Process for ZNF346-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZNF346-IT1 Gene

Drugs & Compounds for ZNF346-IT1 Gene

No Compound Related Data Available

Transcripts for ZNF346-IT1 Gene

mRNA/cDNA for ZNF346-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF346-IT1 Gene

No ASD Table

Relevant External Links for ZNF346-IT1 Gene

GeneLoc Exon Structure for
ZNF346-IT1
ECgene alternative splicing isoforms for
ZNF346-IT1

Expression for ZNF346-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZNF346-IT1 Gene

genes like me logo Genes that share expression patterns with ZNF346-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF346-IT1 Gene

Orthologs for ZNF346-IT1 Gene

Evolution for ZNF346-IT1 Gene

ENSEMBL:
Gene Tree for ZNF346-IT1 (if available)
TreeFam:
Gene Tree for ZNF346-IT1 (if available)

No data available for Orthologs for ZNF346-IT1 Gene

Paralogs for ZNF346-IT1 Gene

No data available for Paralogs for ZNF346-IT1 Gene

Variants for ZNF346-IT1 Gene

Additional Variant Information for ZNF346-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF346-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ZNF346-IT1 Gene

Disorders for ZNF346-IT1 Gene

No disorders were found for ZNF346-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ZNF346-IT1 Gene

Publications for ZNF346-IT1 Gene

No publications were found for ZNF346-IT1 Gene.

Products for ZNF346-IT1 Gene

Sources for ZNF346-IT1 Gene

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