Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ZNF300P1 Gene

Aliases for ZNF300P1 Gene

  • Zinc Finger Protein 300 Pseudogene 1 2 3 5
  • Zinc Finger Protein 300 Pseudogene 1 (Functional) 2

External Ids for ZNF300P1 Gene

Previous GeneCards Identifiers for ZNF300P1 Gene

  • GC05M150309
  • GC05M145455

Summaries for ZNF300P1 Gene

GeneCards Summary for ZNF300P1 Gene

ZNF300P1 (Zinc Finger Protein 300 Pseudogene 1) is a Pseudogene.

Additional gene information for ZNF300P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF300P1 Gene

Genomics for ZNF300P1 Gene

GeneHancer (GH) Regulatory Elements for ZNF300P1 Gene

Promoters and enhancers for ZNF300P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I150945 Promoter/Enhancer 1.3 Ensembl ENCODE 584.6 +0.1 77 1.8 HDAC1 TAF9B ARNT TEAD4 ASH1L MCM2 E4F1 YY1 CHAMP1 MTA3 ZNF300P1 PIR57127
GH05I150904 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 70.3 +41.6 41583 1.6 HDGF ARNT ARID4B SIN3A DMAP1 YY1 POLR2B ZNF766 SP3 NFYC ZNF300 ZNF300P1 HMGXB3 TCOF1 G3BP1 IRGM SMIM3 RBM22 CCDC69 TIGD6
GH05I149956 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 44.3 +986.9 986935 6.7 HDGF PKNOX1 CLOCK SMAD1 FOXA2 MLX ZFP64 ARID4B SIN3A FEZF1 SLC26A2 PDE6A HMGXB3 TCOF1 ZNF300 ZNF300P1 TIGD6 RPL7P1 CSNK1A1 RPS20P4
GH05I151074 Promoter/Enhancer 2.9 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 22.4 -134.7 -134688 13.6 HDGF PKNOX1 FOXA2 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 IRF4 TNIP1 ZNF300P1 TCOF1 G3BP1 ANXA6 RPL7P1 ZNF300 RPS14 SMIM3 PDGFRB
GH05I149999 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 24.7 +945.5 945514 3.5 CLOCK ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 HMGXB3 TIGD6 ZNF300P1 TCOF1 RPS20P4 RPL7P1 ZNF300 CAMK2A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ZNF300P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ZNF300P1 Gene

Genomic Locations for ZNF300P1 Gene
chr5:150,930,436-150,946,584
(GRCh38/hg38)
Size:
16,149 bases
Orientation:
Minus strand
chr5:150,309,998-150,326,146
(GRCh37/hg19)

Genomic View for ZNF300P1 Gene

Genes around ZNF300P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF300P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF300P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF300P1 Gene

Proteins for ZNF300P1 Gene

Post-translational modifications for ZNF300P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZNF300P1 Gene

Domains & Families for ZNF300P1 Gene

Gene Families for ZNF300P1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ZNF300P1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZNF300P1 Gene

Function for ZNF300P1 Gene

Phenotypes From GWAS Catalog for ZNF300P1 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNF300P1 Gene

Localization for ZNF300P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZNF300P1 Gene

Pathways & Interactions for ZNF300P1 Gene

SuperPathways for ZNF300P1 Gene

No Data Available

Interacting Proteins for ZNF300P1 Gene

Gene Ontology (GO) - Biological Process for ZNF300P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZNF300P1 Gene

Drugs & Compounds for ZNF300P1 Gene

No Compound Related Data Available

Transcripts for ZNF300P1 Gene

mRNA/cDNA for ZNF300P1 Gene

(7) Additional mRNA sequences :
(18) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZNF300P1 Gene

Zinc finger protein 300 pseudogene 1:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF300P1 Gene

ExUns: 1 ^ 2 ^ 3a · 3b ^ 4 ^ 5a · 5b
SP1:
SP2: -

Relevant External Links for ZNF300P1 Gene

GeneLoc Exon Structure for
ZNF300P1
ECgene alternative splicing isoforms for
ZNF300P1

Expression for ZNF300P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZNF300P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of ZNF300P1 Gene:

ZNF300P1

SOURCE GeneReport for Unigene cluster for ZNF300P1 Gene:

Hs.661876
genes like me logo Genes that share expression patterns with ZNF300P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF300P1 Gene

Orthologs for ZNF300P1 Gene

Evolution for ZNF300P1 Gene

ENSEMBL:
Gene Tree for ZNF300P1 (if available)
TreeFam:
Gene Tree for ZNF300P1 (if available)

No data available for Orthologs for ZNF300P1 Gene

Paralogs for ZNF300P1 Gene

(254) SIMAP similar genes for ZNF300P1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with ZNF300P1: view

No data available for Paralogs for ZNF300P1 Gene

Variants for ZNF300P1 Gene

Sequence variations from dbSNP and Humsavar for ZNF300P1 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000502870 -- 150,939,975(-) T/C intron_variant
rs1000661296 -- 150,935,359(-) C/A intron_variant
rs1000713979 -- 150,942,753(-) T/C intron_variant
rs1000757054 -- 150,932,847(-) T/C intron_variant
rs1000861993 -- 150,942,410(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ZNF300P1 Gene

Variant ID Type Subtype PubMed ID
dgv10114n54 CNV loss 21841781
dgv5817n100 CNV loss 25217958
esv3607174 OTHER inversion 21293372
nsv526742 CNV gain 19592680

Additional Variant Information for ZNF300P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF300P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ZNF300P1 Gene

Disorders for ZNF300P1 Gene

Additional Disease Information for ZNF300P1

No disorders were found for ZNF300P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF300P1 Gene

Publications for ZNF300P1 Gene

  1. ZNF300P1 encodes a lincRNA that regulates cell polarity and is epigenetically silenced in type II epithelial ovarian cancer. (PMID: 24393131) Gloss B … Samimi G (Molecular cancer 2014) 2 3 58
  2. Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease. (PMID: 23128233) Jostins L … Cho JH (Nature 2012) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for ZNF300P1 Gene

Sources for ZNF300P1 Gene

Content
Loading form....