Aliases for ZNF236-DT Gene

Data sources for ZNF236-DT Gene:

Subcategory (RNA class) for ZNF236-DT Gene

lncRNA

Aliases for ZNF236-DT Gene

External Ids for ZNF236-DT Gene

Summaries for ZNF236-DT Gene

GeneCards Summary for ZNF236-DT Gene

ZNF236-DT (ZNF236 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ZNF236-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ZNF236-DT Gene

Genomics for ZNF236-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ZNF236-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J076820 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 250.7 -0.2 -230 5.1 CHD2 TBP POLR2A CTCF ELF1 NONO THAP11 SIN3A ZNF395 SIN3B ZNF236 ZNF236-DT RNU6-346P HSALNG0122595 ZNF516
GH18J076802 Promoter/Enhancer 1.2 ENCODE CraniofacialAtlas 0.3 +20.0 20047 0.6 ZBTB10 FEZF1 CTCF REST TRIM22 SMAD4 SAP130 ZNF341 SMC3 GABPB1 RNU6-346P RF00026-496 ZNF236 lnc-ZNF236-3 ZNF236-DT ZNF516
GH18J076803 Enhancer 0.8 ENCODE 0.4 +18.2 18244 0.8 CTCF MAX TRIM22 EBF1 SMC3 RAD21 YY1 SMARCA5 MLLT1 ZFP37 ENSG00000278107 lnc-ZNF236-3 ZNF236 RNU6-346P ZNF236-DT ZNF516
GH18J076805 Enhancer 0.7 Ensembl ENCODE 0.4 +16.2 16186 1.9 CEBPA CTCF JUND SOX5 BHLHE40 ZNF3 JUN FOS SOX13 CREB1 ENSG00000278107 lnc-ZNF236-3 ZNF236 HSALNG0122595 ZNF236-DT ZNF516
GH18J076811 Enhancer 0.7 Ensembl 0.4 +10.6 10613 0.2 NR2C1 ZNF395 REST SPI1 ELF1 IKZF1 TCF7 NR2F1 ESRRA ZNF217 ZNF236 ENSG00000278107 HSALNG0122595 lnc-ZNF236-3 ZNF236-DT ZNF516
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ZNF236-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ZNF236-DT Gene

Latest Assembly
chr18:76,794,731-76,822,314
(GRCh38/hg38)
Size:
27,584 bases
Orientation:
Minus strand

Previous Assembly
chr18:74,506,688-74,534,251
(GRCh37/hg19 by Entrez Gene)
Size:
27,564 bases
Orientation:
Minus strand

chr18:74,506,688-74,534,251
(GRCh37/hg19 by Ensembl)
Size:
27,564 bases
Orientation:
Minus strand

Genomic View for ZNF236-DT Gene

Genes around ZNF236-DT on UCSC Golden Path with GeneCards custom track
ZNF236-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ZNF236-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF236-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF236-DT Gene

Proteins for ZNF236-DT Gene

Post-translational modifications for ZNF236-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZNF236-DT Gene

Domains & Families for ZNF236-DT Gene

Gene Families for ZNF236-DT Gene

genes like me logo Genes that share domains with ZNF236-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ZNF236-DT Gene

Function for ZNF236-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNF236-DT Gene

Localization for ZNF236-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZNF236-DT Gene

Pathways & Interactions for ZNF236-DT Gene

PathCards logo

SuperPathways for ZNF236-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for ZNF236-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ZNF236-DT Gene

Drugs & Compounds for ZNF236-DT Gene

No Compound Related Data Available

Transcripts for ZNF236-DT Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ZNF236-DT Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007CABAA_9606 lncRNA 1298 3

Ensembl: ENST00000585258 (view in UCSC) ,

LNCipedia: ZNF236-DT:14,

NONCODE: NONHSAT178682.1,

URS000075A384_9606 lncRNA 1295 1

RefSeq: NR_040024,

URS00008B70C8_9606 lncRNA 4118 3

LncBook: HSALNT0253438,

LNCipedia: ZNF236-DT:21,

NONCODE: NONHSAT059956.2,

URS00008BB8C4_9606 lncRNA 1062 3

LncBook: HSALNT0253444,

LNCipedia: ZNF236-DT:13,

NONCODE: NONHSAT059958.2,

URS00008BAD2E_9606 lncRNA 573 3

LncBook: HSALNT0253443,

LNCipedia: ZNF236-DT:17,

NONCODE: NONHSAT059957.2,

ZNF236-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ZNF236-DT Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF236-DT Gene

No ASD Table

Relevant External Links for ZNF236-DT Gene

GeneLoc Exon Structure for
ZNF236-DT

Expression for ZNF236-DT Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ZNF236-DT

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF236-DT Gene

Orthologs for ZNF236-DT Gene

Evolution for ZNF236-DT Gene

ENSEMBL:
Gene Tree for ZNF236-DT (if available)
TreeFam:
Gene Tree for ZNF236-DT (if available)

No data available for Orthologs for ZNF236-DT Gene

Paralogs for ZNF236-DT Gene

No data available for Paralogs for ZNF236-DT Gene

Variants for ZNF236-DT Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for ZNF236-DT Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for ZNF236-DT Gene

Variant ID Type Subtype PubMed ID
esv25595 CNV loss 19812545
esv2717388 CNV deletion 23290073
esv2717420 CNV deletion 23290073
nsv1056690 CNV gain 25217958
nsv1063632 CNV gain 25217958
nsv1144841 CNV deletion 24896259

Additional Variant Information for ZNF236-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF236-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for ZNF236-DT Gene

Disorders for ZNF236-DT Gene

Additional Disease Information for ZNF236-DT

No disorders were found for ZNF236-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF236-DT Gene

Publications for ZNF236-DT Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
  2. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3

No data available for Mastermind for ZNF236-DT Gene

Products for ZNF236-DT Gene

Sources for ZNF236-DT Gene