Aliases for ZNF22-AS1 Gene

Subcategory (RNA class) for ZNF22-AS1 Gene

lncRNA

Number of RNA Genes sources:

1 / 17

Aliases for ZNF22-AS1 Gene

  • ZNF22 Antisense RNA 1 2 3 4 5
  • ZNF22-AS1 2 5
  • C10orf25 3 4
  • Chromosome 10 Open Reading Frame 25 2
  • Uncharacterized Protein ZNF22-AS1 4
  • Uncharacterized Protein C10orf25 3
  • Lnc-DEPP1-6 165
  • FLJ30567 2

External Ids for ZNF22-AS1 Gene

Previous HGNC Symbols for ZNF22-AS1 Gene

  • C10orf25

Summaries for ZNF22-AS1 Gene

GeneCards Summary for ZNF22-AS1 Gene

ZNF22-AS1 (ZNF22 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ZNF22-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ZNF22-AS1 Gene

Genomics for ZNF22-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ZNF22-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ZNF22-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ZNF22-AS1 Gene

Genomic Locations for ZNF22-AS1 Gene
chr10:44,993,932-45,000,888
(GRCh38/hg38)
Size:
6,957 bases
Orientation:
Minus strand
chr10:45,493,146-45,496,470
(GRCh37/hg19)
Size:
3,325 bases
Orientation:
Minus strand

Genomic View for ZNF22-AS1 Gene

Genes around ZNF22-AS1 on UCSC Golden Path with GeneCards custom track
ZNF22-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ZNF22-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF22-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF22-AS1 Gene

Proteins for ZNF22-AS1 Gene

  • Protein details for ZNF22-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5T742-ZFAS1_HUMAN
    Recommended name:
    Uncharacterized protein ZNF22-AS1
    Protein Accession:
    Q5T742
    Secondary Accessions:
    • A1L424
    • Q96NM5

    Protein attributes for ZNF22-AS1 Gene

    Size:
    122 amino acids
    Molecular mass:
    14441 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ZNF22-AS1 Gene

Post-translational modifications for ZNF22-AS1 Gene

  • Glycosylation at Asn49
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for ZNF22-AS1 Gene

Domains & Families for ZNF22-AS1 Gene

Gene Families for ZNF22-AS1 Gene

Protein Domains for ZNF22-AS1 Gene

ProtoNet:
genes like me logo Genes that share domains with ZNF22-AS1: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ZNF22-AS1 Gene

Function for ZNF22-AS1 Gene

Phenotypes From GWAS Catalog for ZNF22-AS1 Gene

Phenotypes for ZNF22-AS1 Gene

genes like me logo Genes that share phenotypes with ZNF22-AS1: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ZNF22-AS1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNF22-AS1 Gene

Localization for ZNF22-AS1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF22-AS1 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ZNF22-AS1 gene
Compartment Confidence
extracellular 4

Gene Ontology (GO) - Cellular Components for ZNF22-AS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
genes like me logo Genes that share ontologies with ZNF22-AS1: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for ZNF22-AS1 Gene

Pathways & Interactions for ZNF22-AS1 Gene

PathCards logo

SuperPathways for ZNF22-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ZNF22-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ZNF22-AS1 Gene

Drugs & Compounds for ZNF22-AS1 Gene

No Compound Related Data Available

Transcripts for ZNF22-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ZNF22-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007CAE77_9606 lncRNA 3078 2

Ensembl: ENST00000625168 (view in UCSC) ,

LNCipedia: lnc-DEPP1-6:1,

URS0000EEACA5_9606 lncRNA 786 2

HGNC: 23509,

RefSeq: NR_126421,

URS0000EEAC8C_9606 lncRNA 2993 1

RefSeq: NR_164113,

ZNF22-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ZNF22-AS1 Gene

1 REFSEQ mRNAs :
8 NCBI additional mRNA sequence :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ZNF22-AS1

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF22-AS1 Gene

No ASD Table

Relevant External Links for ZNF22-AS1 Gene

GeneLoc Exon Structure for
ZNF22-AS1

Expression for ZNF22-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ZNF22-AS1

SOURCE GeneReport for Unigene cluster for ZNF22-AS1 Gene:

Hs.707791

Evidence on tissue expression from TISSUES for ZNF22-AS1 Gene

  • Nervous system(4)
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF22-AS1 Gene

Orthologs for ZNF22-AS1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for ZNF22-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia C10orf25 31
  • 99 (a)
OneToOne
Species where no ortholog for ZNF22-AS1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for ZNF22-AS1 Gene

ENSEMBL:
Gene Tree for ZNF22-AS1 (if available)
TreeFam:
Gene Tree for ZNF22-AS1 (if available)

Paralogs for ZNF22-AS1 Gene

No data available for Paralogs for ZNF22-AS1 Gene

Variants for ZNF22-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for ZNF22-AS1 Gene

SNP ID Clinical significance and condition Chr 10 pos Variation AA Info Type
rs12269028 - p.Ile63Asn
rs41301609 - p.Pro61Leu

Additional dbSNP identifiers (rs#s) for ZNF22-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for ZNF22-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3576560 CNV gain 25503493
esv3623079 CNV loss 21293372
esv3623080 CNV gain 21293372
nsv831846 CNV loss 17160897
nsv831848 CNV gain 17160897

Variation tolerance for ZNF22-AS1 Gene

Residual Variation Intolerance Score: 81.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.43; 54.63% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for ZNF22-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF22-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF22-AS1 Gene

Disorders for ZNF22-AS1 Gene

No disorders were found for ZNF22-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF22-AS1 Gene

Publications for ZNF22-AS1 Gene

  1. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P … Rogers J (Nature 2004) 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  4. A scan of chromosome 10 identifies a novel locus showing strong association with late-onset Alzheimer disease. (PMID: 16385451) Grupe A … Goate A (American journal of human genetics 2006) 3
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4

No data available for Mastermind for ZNF22-AS1 Gene

Products for ZNF22-AS1 Gene

Sources for ZNF22-AS1 Gene