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Aliases for ZNF213-AS1 Gene

Subcategory (RNA class) for ZNF213-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for ZNF213-AS1 Gene

  • ZNF213 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for ZNF213-AS1 Gene

Summaries for ZNF213-AS1 Gene

GeneCards Summary for ZNF213-AS1 Gene

ZNF213-AS1 (ZNF213 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ZNF213-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF213-AS1 Gene

Genomics for ZNF213-AS1 Gene

GeneHancer (GH) Regulatory Elements for ZNF213-AS1 Gene

Promoters and enhancers for ZNF213-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J003133 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 621.5 +0.1 81 3.2 SP1 ZFX NKRF POLR2A ZNF121 ZSCAN21 FOS SP7 KLF14 CREM ZNF213-AS1 ZNF213 ZNF205 ERVK13-1
GH16J002147 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 42.5 +978.4 978432 18.7 ZNF473 MTA3 CC2D1A ZFX SP1 CTCF ELF3 MNT SIX5 CBFA2T2 TRAF7 SNORD60 SNHG19 ENSG00000281010 GC16M002156 GC16M002158 RAB26 ENSG00000261505 SRRM2 ENSG00000260051
GH16J003156 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE dbSUPER 51.5 -24.8 -24808 5.6 MTA3 ZFX CC2D1A ELF3 MLLT1 ZNF121 GTF2F1 CSDE1 ZNF384 ZSCAN21 TRP-TGG3-3 ZNF75A ZNF213-AS1 ZNF205 E4F1 CREBBP ENSG00000261938 RNPS1 PDPK2P ENSG00000215154
GH16J003017 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 43.6 +113.9 113881 8.8 ZNF652 CC2D1A SP1 ZFX ELF3 MNT SIX5 CBFA2T2 ZNF148 NKRF THOC6 CLDN6 HCFC1R1 TNFRSF12A PKMYT1 ZNF263 ENSG00000261938 E4F1 ERVK13-1 TSC2
GH16J002750 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 42.6 +381.7 381714 4.9 ZNF652 SP1 ELF3 ZFX ZKSCAN8 MNT SIX5 ZNF148 NKRF POLR2A SRRM2 GC16P003906 SRRM2-AS1 ZNF75A ERVK13-1 ZNF263 TSC2 ZNF213-AS1 E4F1 ENSG00000261938
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ZNF213-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ZNF213-AS1 Gene

Genomic Locations for ZNF213-AS1 Gene
chr16:3,110,460-3,134,882
(GRCh38/hg38)
Size:
24,423 bases
Orientation:
Minus strand
chr16:3,166,043-3,184,883
(GRCh37/hg19)
Size:
18,841 bases
Orientation:
Minus strand

Genomic View for ZNF213-AS1 Gene

Genes around ZNF213-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF213-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF213-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF213-AS1 Gene

Proteins for ZNF213-AS1 Gene

Post-translational modifications for ZNF213-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZNF213-AS1 Gene

Domains & Families for ZNF213-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZNF213-AS1 Gene

Function for ZNF213-AS1 Gene

Phenotypes From GWAS Catalog for ZNF213-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNF213-AS1 Gene

Localization for ZNF213-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZNF213-AS1 Gene

Pathways & Interactions for ZNF213-AS1 Gene

PathCards logo

SuperPathways for ZNF213-AS1 Gene

No Data Available

Interacting Proteins for ZNF213-AS1 Gene

Gene Ontology (GO) - Biological Process for ZNF213-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZNF213-AS1 Gene

Drugs & Compounds for ZNF213-AS1 Gene

No Compound Related Data Available

Transcripts for ZNF213-AS1 Gene

mRNA/cDNA for ZNF213-AS1 Gene

(4) Additional mRNA sequences :
(12) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(13) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF213-AS1 Gene

No ASD Table

Relevant External Links for ZNF213-AS1 Gene

GeneLoc Exon Structure for
ZNF213-AS1
ECgene alternative splicing isoforms for
ZNF213-AS1

Expression for ZNF213-AS1 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF213-AS1 Gene

Orthologs for ZNF213-AS1 Gene

Evolution for ZNF213-AS1 Gene

ENSEMBL:
Gene Tree for ZNF213-AS1 (if available)
TreeFam:
Gene Tree for ZNF213-AS1 (if available)

No data available for Orthologs for ZNF213-AS1 Gene

Paralogs for ZNF213-AS1 Gene

No data available for Paralogs for ZNF213-AS1 Gene

Variants for ZNF213-AS1 Gene

Sequence variations from dbSNP and Humsavar for ZNF213-AS1 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000337643 -- 3,129,940(-) T/G intron_variant
rs1000445393 -- 3,133,235(-) G/C intron_variant
rs1000476568 -- 3,133,054(-) G/A intron_variant
rs1000486670 -- 3,134,851(-) C/T non_coding_transcript_variant
rs1000570780 -- 3,134,575(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ZNF213-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv457355 CNV gain 19166990
nsv509589 CNV insertion 20534489
nsv571248 CNV loss 21841781
nsv571249 CNV gain 21841781
nsv833125 CNV loss 17160897

Additional Variant Information for ZNF213-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF213-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ZNF213-AS1 Gene

Disorders for ZNF213-AS1 Gene

Additional Disease Information for ZNF213-AS1

No disorders were found for ZNF213-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF213-AS1 Gene

Publications for ZNF213-AS1 Gene

  1. Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study. (PMID: 23934736) Yu B … Boerwinkle E (Genetic epidemiology 2013) 3 58

No data available for External Links for ZNF213-AS1 Gene

Products for ZNF213-AS1 Gene

Sources for ZNF213-AS1 Gene

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