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ZNF143 (Zinc Finger Protein 143) is a Protein Coding gene. Diseases associated with ZNF143 include Disorders Of Intracellular Cobalamin Metabolism and Branchiootorenal Syndrome 2. Among its related pathways are Gene Expression and HIV Transcription Elongation. Gene Ontology (GO) annotations related to this gene include nucleic acid binding. An important paralog of this gene is ZNF76.
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0000978 | RNA polymerase II proximal promoter sequence-specific DNA binding | IDA | 10893243 |
GO:0001228 | DNA-binding transcription activator activity, RNA polymerase II-specific | IDA | 10893243 |
GO:0003676 | nucleic acid binding | IEA | -- |
GO:0003677 | DNA binding | IBA | 21873635 |
GO:0003700 | DNA-binding transcription factor activity | IBA | 21873635 |
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0005634 | nucleus | IBA | 21873635 |
GO:0005654 | nucleoplasm | TAS | -- |
SuperPathway | Contained pathways | ||
---|---|---|---|
1 | RNA Polymerase III Transcription Initiation | ||
2 | Gene Expression |
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3 | Activated PKN1 stimulates transcription of AR (androgen receptor) regulated genes KLK2 and KLK3 | ||
4 | HIV Transcription Elongation |
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0006355 | regulation of transcription, DNA-templated | IBA | 21873635 |
GO:0006357 | regulation of transcription by RNA polymerase II | TAS | 9566884 |
GO:0006359 | regulation of transcription by RNA polymerase III | TAS | 9566884 |
GO:0006366 | transcription by RNA polymerase II | TAS | 9009278 |
GO:0006383 | transcription by RNA polymerase III | TAS | 9009278 |
ExUns: | 1a | · | 1b | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11a | · | 11b | ^ | 12 | ^ | 13 | ^ | 14a | · | 14b | ^ | 15 | ^ | 16a | · | 16b | ^ | 17 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SP1: | - | - | |||||||||||||||||||||||||||||||||||||||||
SP2: | |||||||||||||||||||||||||||||||||||||||||||
SP3: | - | ||||||||||||||||||||||||||||||||||||||||||
SP4: | |||||||||||||||||||||||||||||||||||||||||||
SP5: |
This gene was present in the common ancestor of chordates.
Organism | Taxonomy | Gene | Similarity | Type | Details |
---|---|---|---|---|---|
Chimpanzee (Pan troglodytes) |
Mammalia | ZNF143 30 31 |
|
OneToOne | |
Oppossum (Monodelphis domestica) |
Mammalia | ZNF143 31 |
|
OneToOne | |
Dog (Canis familiaris) |
Mammalia | ZNF143 30 31 |
|
OneToOne | |
Cow (Bos Taurus) |
Mammalia | ZNF143 30 31 |
|
OneToOne | |
Mouse (Mus musculus) |
Mammalia | Zfp143 30 17 31 |
|
OneToOne | |
Rat (Rattus norvegicus) |
Mammalia | Zfp143 30 |
|
||
Platypus (Ornithorhynchus anatinus) |
Mammalia | ZNF143 31 |
|
OneToOne | |
Chicken (Gallus gallus) |
Aves | ZNF143 30 31 |
|
OneToOne | |
Lizard (Anolis carolinensis) |
Reptilia | ZNF143 31 |
|
OneToOne | |
Tropical Clawed Frog (Silurana tropicalis) |
Amphibia | znf143 30 |
|
||
Str.3450 30 |
|
||||
African clawed frog (Xenopus laevis) |
Amphibia | Xl.23822 30 |
|
||
Zebrafish (Danio rerio) |
Actinopterygii | wee1 31 |
|
OneToMany | |
znf143b 30 31 |
|
OneToMany | |||
znf143a 31 |
|
OneToMany | |||
zgc66276 30 |
|
||||
Rainbow Trout (Oncorhynchus mykiss) |
Actinopterygii | Omy.13634 30 |
|
||
Sea Squirt (Ciona savignyi) |
Ascidiacea | -- 31 |
|
OneToMany |
SNP ID | Clinical significance and condition | Chr 11 pos | Variation | AA Info | Type |
---|---|---|---|---|---|
768424 | Benign: not provided | 9,478,591(+) | A/G | INTRON_VARIANT | |
768425 | Benign: not provided | 9,512,454(+) | G/A | MISSENSE_VARIANT | |
787374 | Benign: not provided | 9,497,751(+) | A/G | SYNONYMOUS_VARIANT | |
rs10743108 | - | p.Glu561Gln | |||
rs34972213 | - | p.Gly461Asp |
Variant ID | Type | Subtype | PubMed ID |
---|---|---|---|
dgv584n106 | CNV | deletion | 24896259 |
esv24739 | CNV | loss | 19812545 |
esv2486941 | CNV | deletion | 19546169 |
esv2675320 | CNV | deletion | 23128226 |
esv2744093 | CNV | deletion | 23290073 |
esv3547301 | CNV | deletion | 23714750 |
esv3625334 | CNV | loss | 21293372 |
esv3625335 | CNV | loss | 21293372 |
esv3625336 | CNV | loss | 21293372 |
nsv1039537 | CNV | gain | 25217958 |
nsv1055078 | CNV | gain | 25217958 |
nsv1069561 | CNV | deletion | 25765185 |
nsv1119859 | CNV | deletion | 24896259 |
nsv1122583 | CNV | deletion | 24896259 |
nsv1148850 | CNV | deletion | 26484159 |
nsv499766 | OTHER | inversion | 21111241 |
nsv512209 | CNV | loss | 21212237 |
nsv553467 | CNV | loss | 21841781 |
nsv7215 | OTHER | inversion | 18451855 |
nsv7670 | CNV | deletion | 18451855 |
nsv7671 | CNV | insertion | 18451855 |
nsv957161 | CNV | deletion | 24416366 |
Disorder | Aliases | PubMed IDs |
---|---|---|
disorders of intracellular cobalamin metabolism |
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branchiootorenal syndrome 2 |
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