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Aliases for ZMYND19 Gene

Aliases for ZMYND19 Gene

  • Zinc Finger MYND-Type Containing 19 2 3 5
  • MCH-R1-Interacting Zinc Finger Protein 3 4
  • MIZIP 3 4
  • Melanin-Concentrating Hormone Receptor 1 Interacting Zinc-Finger Protein 3
  • Melanin-Concentrating Hormone Receptor 1-Interacting Zinc Finger Protein 4
  • Zinc Finger MYND Domain-Containing Protein 19 3
  • Zinc Finger, MYND Domain Containing 19 3

External Ids for ZMYND19 Gene

Previous GeneCards Identifiers for ZMYND19 Gene

  • GC09M133778
  • GC09M135695
  • GC09M137752
  • GC09M139596
  • GC09M140476
  • GC09M109938

Summaries for ZMYND19 Gene

Entrez Gene Summary for ZMYND19 Gene

  • ZMYND19 is a MYND zinc finger domain-containing protein that binds to the C terminus of melanin-concentrating hormone receptor-1 (MCHR1; MIM 601751) (Bachner et al., 2002 [PubMed 12208518]), and to the N termini of alpha-tubulin (TUBA1; MIM 191110), and beta-tubulin (TUBB; MIM 191130) (Francke et al., 2005 [PubMed 16039987]).[supplied by OMIM, Mar 2008]

GeneCards Summary for ZMYND19 Gene

ZMYND19 (Zinc Finger MYND-Type Containing 19) is a Protein Coding gene.

UniProtKB/Swiss-Prot for ZMYND19 Gene

  • May be involved as a regulatory molecule in GPR24/MCH-R1 signaling.

Additional gene information for ZMYND19 Gene

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZMYND19 Gene

Genomics for ZMYND19 Gene

GeneHancer (GH) Regulatory Elements for ZMYND19 Gene

Promoters and enhancers for ZMYND19 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I137588 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 556 +0.2 175 3.2 ATF1 ARID4B SIN3A DMAP1 GLI4 ZNF121 GLIS2 E2F8 ZNF143 ZNF207 ZMYND19 EHMT1 NDOR1 ANAPC2 SNHG7 GC09P137588 PIR45048 GC09M137538
GH09I137193 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.7 +392.0 392041 9.8 HDGF PKNOX1 SMAD1 FOXA2 MLX ARID4B SIN3A DMAP1 ZNF2 ZBTB7B TPRN EHMT1 SDCCAG3 LOC651337 ANAPC2 SNAPC4 FAM166A NDOR1 INPP5E ZMYND19
GH09I137632 Enhancer 1.2 Ensembl ENCODE dbSUPER 18.9 -42.4 -42401 1.8 INSM2 KLF17 MZF1 ZNF2 ZNF335 ZNF121 ZNF366 ZSCAN5C FOS EGR2 ZMYND19 ARRDC1 DPH7 EHMT1 ENSG00000274841 ENSG00000283411 GC09M137538
GH09I137610 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 7.6 -25.1 -25074 10.5 HDGF PKNOX1 CLOCK ARID4B NEUROD1 SIN3A DMAP1 ZBTB7B YY1 POLR2B EHMT1 ANAPC2 DPH7 SNHG7 LOC651337 EXD3 MAN1B1 ZMYND19 ARRDC1-AS1 ARRDC1
GH09I137678 Enhancer 1.1 Ensembl ENCODE dbSUPER 16.7 -89.6 -89586 3.7 PKNOX1 MAX SIN3A EBF1 FEZF1 ZKSCAN1 GATA3 POLR2A PATZ1 ZNF600 EHMT1 ZMYND19 ARRDC1-AS1 ARRDC1 EXD3 NOXA1 SETP5 ENSG00000283411 GC09P137764 GC09M137538
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ZMYND19 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the ZMYND19 gene promoter:

Genomic Locations for ZMYND19 Gene

Genomic Locations for ZMYND19 Gene
chr9:137,582,076-137,590,490
(GRCh38/hg38)
Size:
8,415 bases
Orientation:
Minus strand
chr9:140,476,531-140,484,942
(GRCh37/hg19)

Genomic View for ZMYND19 Gene

Genes around ZMYND19 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZMYND19 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZMYND19 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZMYND19 Gene

Proteins for ZMYND19 Gene

  • Protein details for ZMYND19 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96E35-ZMY19_HUMAN
    Recommended name:
    Zinc finger MYND domain-containing protein 19
    Protein Accession:
    Q96E35
    Secondary Accessions:
    • Q5T366

    Protein attributes for ZMYND19 Gene

    Size:
    227 amino acids
    Molecular mass:
    26433 Da
    Quaternary structure:
    • Interacts with GPR24/MCH-R1.

neXtProt entry for ZMYND19 Gene

Post-translational modifications for ZMYND19 Gene

No Post-translational modifications

Other Protein References for ZMYND19 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ZMYND19 Gene

Domains & Families for ZMYND19 Gene

Gene Families for ZMYND19 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for ZMYND19 Gene

Suggested Antigen Peptide Sequences for ZMYND19 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ZMYND19: view

No data available for UniProtKB/Swiss-Prot for ZMYND19 Gene

Function for ZMYND19 Gene

Molecular function for ZMYND19 Gene

UniProtKB/Swiss-Prot Function:
May be involved as a regulatory molecule in GPR24/MCH-R1 signaling.

Phenotypes From GWAS Catalog for ZMYND19 Gene

Gene Ontology (GO) - Molecular Function for ZMYND19 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 16189514
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZMYND19: view

Phenotypes for ZMYND19 Gene

genes like me logo Genes that share phenotypes with ZMYND19: view

Animal Model Products

miRNA for ZMYND19 Gene

miRTarBase miRNAs that target ZMYND19

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ZMYND19 Gene

Localization for ZMYND19 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZMYND19 Gene

Cytoplasm. Cell membrane; Peripheral membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ZMYND19 gene
Compartment Confidence
plasma membrane 3
nucleus 3
cytosol 2
golgi apparatus 2
extracellular 1
mitochondrion 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Golgi apparatus (2)
  • Vesicles (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for ZMYND19 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
GO:0005886 plasma membrane IEA --
GO:0016020 membrane IEA --
GO:0045202 synapse IEA --
genes like me logo Genes that share ontologies with ZMYND19: view

Pathways & Interactions for ZMYND19 Gene

SuperPathways for ZMYND19 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ZMYND19 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZMYND19 Gene

Drugs & Compounds for ZMYND19 Gene

No Compound Related Data Available

Transcripts for ZMYND19 Gene

mRNA/cDNA for ZMYND19 Gene

Unigene Clusters for ZMYND19 Gene

Zinc finger, MYND-type containing 19:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZMYND19 Gene

No ASD Table

Relevant External Links for ZMYND19 Gene

GeneLoc Exon Structure for
ZMYND19
ECgene alternative splicing isoforms for
ZMYND19

Expression for ZMYND19 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZMYND19 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for ZMYND19 Gene



NURSA nuclear receptor signaling pathways regulating expression of ZMYND19 Gene:

ZMYND19

SOURCE GeneReport for Unigene cluster for ZMYND19 Gene:

Hs.128096

mRNA Expression by UniProt/SwissProt for ZMYND19 Gene:

Q96E35-ZMY19_HUMAN
Tissue specificity: Expressed in brain, testis, placenta, heart, liver, skeletal muscle, kidney and stomach.

Evidence on tissue expression from TISSUES for ZMYND19 Gene

  • Nervous system(4.2)
genes like me logo Genes that share expression patterns with ZMYND19: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZMYND19 Gene

Orthologs for ZMYND19 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ZMYND19 Gene

Organism Taxonomy Gene Similarity Type Details
oppossum
(Monodelphis domestica)
Mammalia ZMYND19 34
  • 97 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia ZMYND19 33 34
  • 94.12 (n)
mouse
(Mus musculus)
Mammalia Zmynd19 33 16 34
  • 90.16 (n)
rat
(Rattus norvegicus)
Mammalia Zmynd19 33
  • 89.43 (n)
dog
(Canis familiaris)
Mammalia ZMYND19 33 34
  • 88.63 (n)
cow
(Bos Taurus)
Mammalia ZMYND19 33 34
  • 88.31 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia ZMYND19 34
  • 71 (a)
OneToOne
chicken
(Gallus gallus)
Aves ZMYND19 33 34
  • 83.99 (n)
lizard
(Anolis carolinensis)
Reptilia ZMYND19 34
  • 84 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia zmynd19 33
  • 75.62 (n)
African clawed frog
(Xenopus laevis)
Amphibia Xl.12777 33
zebrafish
(Danio rerio)
Actinopterygii zmynd19 33 34
  • 71.95 (n)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.10614 33
sea squirt
(Ciona savignyi)
Ascidiacea CSA.4875 34
  • 49 (a)
OneToOne
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.2680 33
Species where no ortholog for ZMYND19 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ZMYND19 Gene

ENSEMBL:
Gene Tree for ZMYND19 (if available)
TreeFam:
Gene Tree for ZMYND19 (if available)

Paralogs for ZMYND19 Gene

Pseudogenes.org Pseudogenes for ZMYND19 Gene

genes like me logo Genes that share paralogs with ZMYND19: view

No data available for Paralogs for ZMYND19 Gene

Variants for ZMYND19 Gene

Sequence variations from dbSNP and Humsavar for ZMYND19 Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1000365012 -- 137,591,083(-) C/G upstream_transcript_variant
rs1000438762 -- 137,591,364(-) C/G upstream_transcript_variant
rs1000458971 -- 137,584,274(-) T/C/G genic_downstream_transcript_variant, intron_variant
rs1000617867 -- 137,588,472(-) G/C/T intron_variant
rs1000697740 -- 137,590,491(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ZMYND19 Gene

Variant ID Type Subtype PubMed ID
nsv831763 CNV loss 17160897
nsv831762 CNV loss 17160897
nsv616023 CNV loss 21841781
nsv1144306 CNV deletion 24896259
nsv1133752 CNV deletion 24896259
nsv1077205 CNV deletion 25765185
dgv13012n54 CNV loss 21841781

Variation tolerance for ZMYND19 Gene

Residual Variation Intolerance Score: 26.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.45; 9.85% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for ZMYND19 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZMYND19

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZMYND19 Gene

Disorders for ZMYND19 Gene

Additional Disease Information for ZMYND19

No disorders were found for ZMYND19 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZMYND19 Gene

Publications for ZMYND19 Gene

  1. MIZIP, a highly conserved, vertebrate specific melanin-concentrating hormone receptor 1 interacting zinc-finger protein. (PMID: 12208518) Bächner D … Richter D (FEBS letters 2002) 3 4 22 58
  2. MYND domain specific interaction of the melanin-concentrating hormone receptor 1 interacting zinc-finger protein with alpha- and beta-tubulin. (PMID: 16039987) Francke F … Bächner D (Biochemical and biophysical research communications 2005) 3 22 58
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  4. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 58
  5. An organelle-specific protein landscape identifies novel diseases and molecular mechanisms. (PMID: 27173435) Boldt K … UK10K Rare Diseases Group (Nature communications 2016) 3 58

Products for ZMYND19 Gene

Sources for ZMYND19 Gene

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