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Aliases for ZMIZ1-AS1 Gene

Subcategory (RNA class) for ZMIZ1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for ZMIZ1-AS1 Gene

  • ZMIZ1 Antisense RNA 1 2 3 5

External Ids for ZMIZ1-AS1 Gene

Previous GeneCards Identifiers for ZMIZ1-AS1 Gene

  • GC10M080705

Summaries for ZMIZ1-AS1 Gene

GeneCards Summary for ZMIZ1-AS1 Gene

ZMIZ1-AS1 (ZMIZ1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ZMIZ1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZMIZ1-AS1 Gene

Genomics for ZMIZ1-AS1 Gene

GeneHancer (GH) Regulatory Elements for ZMIZ1-AS1 Gene

Promoters and enhancers for ZMIZ1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J079378 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 20.6 -313.1 -313072 4.3 ZNF652 ELF3 MNT POLR2A CEBPG RERE TFE3 SP7 SP1 SP5 ENSG00000235426 LOC642361 ZMIZ1-AS1 ENSG00000272489 PPIF ZCCHC24 SFTPD-AS1
GH10J079442 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 11.5 -376.8 -376849 5 HDGF SP1 ZFX CC2D1A ZNF148 NKRF POLR2A MLLT1 GTF2F1 NFIB ZCCHC24 ENSG00000272489 ZMIZ1 ZMIZ1-AS1 NUTM2B-AS1 GC10M079406
GH10J079066 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 9.7 -8.5 -8486 20.4 CC2D1A ZFX ZNF652 SP1 ELF3 CTCF ZKSCAN8 SIX5 CBFA2T2 ZNF148 SFTPA1 LOC642361 ENSG00000272489 ENSG00000224886 ZMIZ1 SFTPD-AS1 ZMIZ1-AS1 GC10M079169
GH10J079135 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 13.5 -83.0 -83017 31.6 ZNF652 ZFX CC2D1A SP1 ELF3 ZKSCAN8 MNT CBFA2T2 MLLT1 CEBPG PPIF ENSG00000272489 ZMIZ1-AS1 LOC642361 ZMIZ1 GC10M079169
GH10J079018 Enhancer 1.1 Ensembl ENCODE 16.1 +48.4 48425 2.7 ZFX CC2D1A CBFA2T2 GTF2F1 TRIM24 SP1 EGR1 SMARCA4 MTA1 RXRA ZMIZ1-AS1 ZMIZ1 ENSG00000229569
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ZMIZ1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ZMIZ1-AS1 Gene

Genomic Locations for ZMIZ1-AS1 Gene
chr10:78,943,326-79,067,895
(GRCh38/hg38)
Size:
124,570 bases
Orientation:
Minus strand
chr10:80,703,083-80,827,652
(GRCh37/hg19)
Size:
124,570 bases
Orientation:
Minus strand

Genomic View for ZMIZ1-AS1 Gene

Genes around ZMIZ1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZMIZ1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZMIZ1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZMIZ1-AS1 Gene

Proteins for ZMIZ1-AS1 Gene

Post-translational modifications for ZMIZ1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZMIZ1-AS1 Gene

Domains & Families for ZMIZ1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZMIZ1-AS1 Gene

Function for ZMIZ1-AS1 Gene

Phenotypes From GWAS Catalog for ZMIZ1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZMIZ1-AS1 Gene

Localization for ZMIZ1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZMIZ1-AS1 Gene

Pathways & Interactions for ZMIZ1-AS1 Gene

PathCards logo

SuperPathways for ZMIZ1-AS1 Gene

No Data Available

Interacting Proteins for ZMIZ1-AS1 Gene

Gene Ontology (GO) - Biological Process for ZMIZ1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZMIZ1-AS1 Gene

Drugs & Compounds for ZMIZ1-AS1 Gene

No Compound Related Data Available

Transcripts for ZMIZ1-AS1 Gene

mRNA/cDNA for ZMIZ1-AS1 Gene

Unigene Clusters for ZMIZ1-AS1 Gene

ZMIZ1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZMIZ1-AS1 Gene

No ASD Table

Relevant External Links for ZMIZ1-AS1 Gene

GeneLoc Exon Structure for
ZMIZ1-AS1
ECgene alternative splicing isoforms for
ZMIZ1-AS1

Expression for ZMIZ1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZMIZ1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ZMIZ1-AS1 Gene

This gene is overexpressed in Adrenal Gland (x5.1) and Testis (x4.8).

SOURCE GeneReport for Unigene cluster for ZMIZ1-AS1 Gene:

Hs.309176
genes like me logo Genes that share expression patterns with ZMIZ1-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZMIZ1-AS1 Gene

Orthologs for ZMIZ1-AS1 Gene

Evolution for ZMIZ1-AS1 Gene

ENSEMBL:
Gene Tree for ZMIZ1-AS1 (if available)
TreeFam:
Gene Tree for ZMIZ1-AS1 (if available)

No data available for Orthologs for ZMIZ1-AS1 Gene

Paralogs for ZMIZ1-AS1 Gene

No data available for Paralogs for ZMIZ1-AS1 Gene

Variants for ZMIZ1-AS1 Gene

Sequence variations from dbSNP and Humsavar for ZMIZ1-AS1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000032969 -- 79,066,735(-) C/G/T intron_variant
rs1000041294 -- 79,005,681(-) C/G intron_variant
rs1000125265 -- 79,020,785(-) C/A intron_variant
rs1000126876 -- 78,944,968(-) G/C intron_variant
rs1000135861 -- 79,005,468(-) C/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ZMIZ1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv26238 CNV loss 19812545
esv2738585 CNV deletion 23290073
esv3623905 CNV loss 21293372
nsv1069500 CNV deletion 25765185
nsv1131001 CNV deletion 24896259
nsv467384 CNV gain 19166990
nsv469807 CNV loss 16826518
nsv507564 OTHER sequence alteration 20534489
nsv516458 CNV loss 19592680
nsv525000 CNV loss 19592680
nsv551561 CNV gain 21841781
nsv7343 CNV insertion 18451855

Additional Variant Information for ZMIZ1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZMIZ1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ZMIZ1-AS1 Gene

Disorders for ZMIZ1-AS1 Gene

Additional Disease Information for ZMIZ1-AS1

No disorders were found for ZMIZ1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZMIZ1-AS1 Gene

Publications for ZMIZ1-AS1 Gene

  1. Large-scale genetic study in East Asians identifies six new loci associated with colorectal cancer risk. (PMID: 24836286) Zhang B … Zheng W (Nature genetics 2014) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  4. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

Products for ZMIZ1-AS1 Gene

Sources for ZMIZ1-AS1 Gene

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