Aliases for ZFPM1-AS1 Gene

Data sources for ZFPM1-AS1 Gene:

Subcategory (RNA class) for ZFPM1-AS1 Gene

lncRNA

Aliases for ZFPM1-AS1 Gene

External Ids for ZFPM1-AS1 Gene

Summaries for ZFPM1-AS1 Gene

GeneCards Summary for ZFPM1-AS1 Gene

ZFPM1-AS1 (ZFPM1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ZFPM1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ZFPM1-AS1 Gene

Genomics for ZFPM1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ZFPM1-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ZFPM1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ZFPM1-AS1 Gene

Latest Assembly
chr16:88,512,959-88,531,053
(GRCh38/hg38)
Size:
18,095 bases
Orientation:
Minus strand

Previous Assembly
chr16:88,579,367-88,597,461
(GRCh37/hg19 by Entrez Gene)
Size:
18,095 bases
Orientation:
Minus strand

chr16:88,579,368-88,597,461
(GRCh37/hg19 by Ensembl)
Size:
18,094 bases
Orientation:
Minus strand

Genomic View for ZFPM1-AS1 Gene

Genes around ZFPM1-AS1 on UCSC Golden Path with GeneCards custom track
ZFPM1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ZFPM1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZFPM1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZFPM1-AS1 Gene

Proteins for ZFPM1-AS1 Gene

Post-translational modifications for ZFPM1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZFPM1-AS1 Gene

Domains & Families for ZFPM1-AS1 Gene

Gene Families for ZFPM1-AS1 Gene

genes like me logo Genes that share domains with ZFPM1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ZFPM1-AS1 Gene

Function for ZFPM1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZFPM1-AS1 Gene

Localization for ZFPM1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZFPM1-AS1 Gene

Pathways & Interactions for ZFPM1-AS1 Gene

PathCards logo

SuperPathways for ZFPM1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ZFPM1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ZFPM1-AS1 Gene

Drugs & Compounds for ZFPM1-AS1 Gene

No Compound Related Data Available

Transcripts for ZFPM1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ZFPM1-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000FEBAB_9606 lncRNA 737 3

Ensembl: ENST00000563243 (view in UCSC) ,

LNCipedia: lnc-CYBA-5:1,

NONCODE: NONHSAT144385.2,

URS0000BC44BE_9606 lncRNA 734 1

RefSeq: NR_148997,

ZFPM1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ZFPM1-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for ZFPM1-AS1 Gene

No ASD Table

Relevant External Links for ZFPM1-AS1 Gene

GeneLoc Exon Structure for
ZFPM1-AS1

Expression for ZFPM1-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZFPM1-AS1 Gene

Orthologs for ZFPM1-AS1 Gene

Evolution for ZFPM1-AS1 Gene

ENSEMBL:
Gene Tree for ZFPM1-AS1 (if available)
TreeFam:
Gene Tree for ZFPM1-AS1 (if available)

No data available for Orthologs for ZFPM1-AS1 Gene

Paralogs for ZFPM1-AS1 Gene

No data available for Paralogs for ZFPM1-AS1 Gene

Variants for ZFPM1-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for ZFPM1-AS1 Gene

SNP ID Clinical significance and condition Chr 16 pos Variation AA Info Type
rs114240624 Benign: not provided 88,526,888(-) C/T
NM_153813.3(ZFPM1):c.477C>T (p.Ala159=)
SYNONYMOUS

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for ZFPM1-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for ZFPM1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZFPM1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ZFPM1-AS1 Gene

Disorders for ZFPM1-AS1 Gene

No disorders were found for ZFPM1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ZFPM1-AS1 Gene

Publications for ZFPM1-AS1 Gene

No publications were found for ZFPM1-AS1 Gene.

No data available for Mastermind for ZFPM1-AS1 Gene

Products for ZFPM1-AS1 Gene

Sources for ZFPM1-AS1 Gene