ZFPM1-AS1 Gene (RNA Gene)

ZFPM1 Antisense RNA 1

GC16M088514
GIFtS:
8
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Aliases for ZFPM1-AS1 Gene

Data sources for ZFPM1-AS1 Gene:

Subcategory (RNA class) for ZFPM1-AS1 Gene

lncRNA

Aliases for ZFPM1-AS1 Gene

External Ids for ZFPM1-AS1 Gene

Summaries for ZFPM1-AS1 Gene

GeneCards Summary for ZFPM1-AS1 Gene

ZFPM1-AS1 (ZFPM1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ZFPM1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ZFPM1-AS1 Gene

Genomics for ZFPM1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for ZFPM1-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ZFPM1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ZFPM1-AS1 Gene

Latest Assembly
chr16:88,512,959-88,531,053
(GRCh38/hg38)
Size:
18,095 bases
Orientation:
Minus strand

Previous Assembly
chr16:88,579,367-88,597,461
(GRCh37/hg19 by Entrez Gene)
Size:
18,095 bases
Orientation:
Minus strand

chr16:88,579,368-88,597,461
(GRCh37/hg19 by Ensembl)
Size:
18,094 bases
Orientation:
Minus strand

Genomic View for ZFPM1-AS1 Gene

Genes around ZFPM1-AS1 on UCSC Golden Path with GeneCards custom track
ZFPM1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ZFPM1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZFPM1-AS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for ZFPM1-AS1 Gene

Proteins for ZFPM1-AS1 Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for ZFPM1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZFPM1-AS1 Gene

Domains & Families for ZFPM1-AS1 Gene

Gene Families for ZFPM1-AS1 Gene

HGNC:
genes like me logo Genes that share domains with ZFPM1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ZFPM1-AS1 Gene

Function for ZFPM1-AS1 Gene

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  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZFPM1-AS1 Gene

Localization for ZFPM1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZFPM1-AS1 Gene

Pathways & Interactions for ZFPM1-AS1 Gene

PathCards logo

SuperPathways for ZFPM1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ZFPM1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ZFPM1-AS1 Gene

Drugs & Compounds for ZFPM1-AS1 Gene

Products:

  1. Drug products for research
No Compound Related Data Available

Transcripts for ZFPM1-AS1 Gene

Products:

  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ZFPM1-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000FEBAB_9606 lncRNA 737 3

Ensembl: ENST00000563243 (view in UCSC) ,

LNCipedia: lnc-CYBA-5:1,

NONCODE: NONHSAT144385.2,

URS0000BC44BE_9606 lncRNA 734 1

RefSeq: NR_148997,

ZFPM1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ZFPM1-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for ZFPM1-AS1 Gene

No ASD Table

Relevant External Links for ZFPM1-AS1 Gene

GeneLoc Exon Structure for
ZFPM1-AS1

Expression for ZFPM1-AS1 Gene

Products:

  1. Primer products for research
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZFPM1-AS1 Gene

Orthologs for ZFPM1-AS1 Gene

Evolution for ZFPM1-AS1 Gene

ENSEMBL:
Gene Tree for ZFPM1-AS1 (if available)
TreeFam:
Gene Tree for ZFPM1-AS1 (if available)

No data available for Orthologs for ZFPM1-AS1 Gene

Paralogs for ZFPM1-AS1 Gene

No data available for Paralogs for ZFPM1-AS1 Gene

Variants for ZFPM1-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for ZFPM1-AS1 Gene

SNP ID Clinical significance and condition Chr 16 pos Variation AA Info Type
rs114240624 Benign: not provided 88,526,888(-) C/T
NM_153813.3(ZFPM1):c.477C>T (p.Ala159=) 		SYNONYMOUS

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for ZFPM1-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for ZFPM1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZFPM1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ZFPM1-AS1 Gene

Disorders for ZFPM1-AS1 Gene

No disorders were found for ZFPM1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ZFPM1-AS1 Gene

Publications for ZFPM1-AS1 Gene

No publications were found for ZFPM1-AS1 Gene.

No data available for Mastermind for ZFPM1-AS1 Gene

Products for ZFPM1-AS1 Gene

Sources for ZFPM1-AS1 Gene