Aliases for ZFHX4-AS1 Gene

Subcategory (RNA class) for ZFHX4-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ZFHX4-AS1 Gene

  • ZFHX4 Antisense RNA 1 2 3 5
  • ZFHX4-AS1 2 5 165
  • ZFHX4 Antisense RNA 1 (Non-Protein Coding) 2 3
  • NONHSAG050558.2 91
  • HSALNG0066317 164

External Ids for ZFHX4-AS1 Gene

Previous GeneCards Identifiers for ZFHX4-AS1 Gene

  • GC08M077405

Summaries for ZFHX4-AS1 Gene

GeneCards Summary for ZFHX4-AS1 Gene

ZFHX4-AS1 (ZFHX4 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ZFHX4-AS1 include Gastric Cancer and Chromosome 8Q21.11 Deletion Syndrome.

Additional gene information for ZFHX4-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ZFHX4-AS1 Gene

Genomics for ZFHX4-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ZFHX4-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J076672 Promoter/Enhancer 3.1 VISTA UCNEbase EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 605.5 +3.2 3214 16.2 RNF2 TEAD4 PRDM10 REST ZNF629 ZNF692 FOXA1 PRDM1 ZSCAN4 POLR2A ZFHX4-AS1 ZFHX4 HIGD1AP18 piR-31938-012 lnc-ZFHX4-5
GH08J076698 Enhancer 1.4 UCNEbase Ensembl ENCODE CraniofacialAtlas dbSUPER 4.5 -15.8 -15798 3.4 PRDM10 POLR2A ZNF341 CEBPB EZH2 ZNF189 BHLHE40 RCOR1 ZNF366 PRDM6 ZFHX4-AS1 ZFHX4 ENSG00000276673 PEX2
GH08J076778 Enhancer 1.2 VISTA UCNEbase ENCODE CraniofacialAtlas 4.7 -95.2 -95151 1.8 JUND POLR2A ZFHX4-AS1 RF00017-7140 lnc-PEX2-7 piR-55705-052 ZFHX4 PEX2
GH08J076736 Enhancer 0.5 Ensembl 4.8 -53.3 -53297 0.4 FOXA1 ATF2 ZNF366 PRDM6 TRIM28 PKNOX1 ZFHX4-AS1 ENSG00000276673 RF00017-7140 ZFHX4 PEX2
GH08J076764 Enhancer 0.4 Ensembl 4.7 -81.4 -81398 1.4 CREB1 ATF2 NANOG ZFHX4-AS1 RF00017-7140 ENSG00000276673 ZFHX4 PEX2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ZFHX4-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ZFHX4-AS1 Gene

Genomic Locations for ZFHX4-AS1 Gene
chr8:76,483,976-76,683,503
(GRCh38/hg38)
Size:
199,528 bases
Orientation:
Minus strand
chr8:77,403,435-77,595,513
(GRCh37/hg19)
Size:
192,079 bases
Orientation:
Minus strand

Genomic View for ZFHX4-AS1 Gene

Genes around ZFHX4-AS1 on UCSC Golden Path with GeneCards custom track
ZFHX4-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ZFHX4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZFHX4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZFHX4-AS1 Gene

Proteins for ZFHX4-AS1 Gene

Post-translational modifications for ZFHX4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZFHX4-AS1 Gene

Domains & Families for ZFHX4-AS1 Gene

Gene Families for ZFHX4-AS1 Gene

genes like me logo Genes that share domains with ZFHX4-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ZFHX4-AS1 Gene

Function for ZFHX4-AS1 Gene

Phenotypes From GWAS Catalog for ZFHX4-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZFHX4-AS1 Gene

Localization for ZFHX4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZFHX4-AS1 Gene

Pathways & Interactions for ZFHX4-AS1 Gene

PathCards logo

SuperPathways for ZFHX4-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ZFHX4-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ZFHX4-AS1 Gene

Drugs & Compounds for ZFHX4-AS1 Gene

No Compound Related Data Available

Transcripts for ZFHX4-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ZFHX4-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000009B5EB_9606 lncRNA 821 4

Ensembl: ENST00000521894 (view in UCSC) ,

LncBook: HSALNT0138955,

LNCipedia: ZFHX4-AS1:6,

NONCODE: NONHSAT127338.2,

URS000018267A_9606 lncRNA 240 3

Ensembl: ENST00000522961 (view in UCSC) ,

LNCipedia: ZFHX4-AS1:4,

NONCODE: NONHSAT127333.2,

URS000075CAFC_9606 lncRNA 1710 2

HGNC: 44165,

RefSeq: NR_024360,

URS0000EF09D5_9606 lncRNA 4977 1

Ensembl: ENST00000663063 (view in UCSC) ,

URS0000EF3C31_9606 lncRNA 3560 1

Ensembl: ENST00000666902 (view in UCSC) ,

ZFHX4-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ZFHX4-AS1 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for ZFHX4-AS1 Gene

No ASD Table

Relevant External Links for ZFHX4-AS1 Gene

GeneLoc Exon Structure for
ZFHX4-AS1

Expression for ZFHX4-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ZFHX4-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ZFHX4-AS1 Gene

This gene is overexpressed in Brain - Putamen (basal ganglia) (x5.0), Brain - Amygdala (x4.7), Brain - Nucleus accumbens (basal ganglia) (x4.7), and Brain - Caudate (basal ganglia) (x4.1).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ZFHX4-AS1

SOURCE GeneReport for Unigene cluster for ZFHX4-AS1 Gene:

Hs.596420
genes like me logo Genes that share expression patterns with ZFHX4-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZFHX4-AS1 Gene

Orthologs for ZFHX4-AS1 Gene

Evolution for ZFHX4-AS1 Gene

ENSEMBL:
Gene Tree for ZFHX4-AS1 (if available)
TreeFam:
Gene Tree for ZFHX4-AS1 (if available)

No data available for Orthologs for ZFHX4-AS1 Gene

Paralogs for ZFHX4-AS1 Gene

No data available for Paralogs for ZFHX4-AS1 Gene

Variants for ZFHX4-AS1 Gene

Additional dbSNP identifiers (rs#s) for ZFHX4-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for ZFHX4-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2737204 CNV deletion 23290073
esv3891416 CNV gain 25118596
nsv398363 CNV deletion 16902084

Additional Variant Information for ZFHX4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZFHX4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for ZFHX4-AS1 Gene

Disorders for ZFHX4-AS1 Gene

MalaCards: The human disease database

(3) MalaCards diseases for ZFHX4-AS1 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
gastric cancer
  • gastric cancer, somatic
chromosome 8q21.11 deletion syndrome
  • 8q21.11 microdeletion syndrome
peters-plus syndrome
  • ptrpls
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with ZFHX4-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ZFHX4-AS1 Gene

Publications for ZFHX4-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for ZFHX4-AS1 Gene

Sources for ZFHX4-AS1 Gene