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Aliases for ZFAT-AS1 Gene

Subcategory (RNA class) for ZFAT-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ZFAT-AS1 Gene

  • ZFAT Antisense RNA 1 2 3 5
  • ZFAT Antisense RNA 1 (Non-Protein Coding) 2 3
  • Zinc Finger Protein 406 Antisense Transcript 3
  • ZFAT Antisense RNA (Non-Protein Coding) 2
  • Non-Protein Coding RNA 70 2
  • NCRNA00070 3
  • SAS-ZFAT 3
  • ZFAT-AS 3
  • ZFATAS 3

External Ids for ZFAT-AS1 Gene

Previous HGNC Symbols for ZFAT-AS1 Gene

  • ZFATAS
  • ZFAT-AS

Previous GeneCards Identifiers for ZFAT-AS1 Gene

  • GC08P135610
  • GC08P134601
  • GC08P134603
  • GC08P134604
  • GC08P134605
  • GC08P134608
  • GC08P134609
  • GC08P134610

Summaries for ZFAT-AS1 Gene

Entrez Gene Summary for ZFAT-AS1 Gene

  • This gene encodes a small antisense RNA that may be involved in regulating the sense strand locus, zinc finger and AT hook domain containing. This RNA may play a role in B cell function. A single nucleotide polymorphism in the promoter of this gene is associated with an increased risk of autoimmune thyroid disease.[provided by RefSeq, Jan 2010]

GeneCards Summary for ZFAT-AS1 Gene

ZFAT-AS1 (ZFAT Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ZFAT-AS1 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZFAT-AS1 Gene

Genomics for ZFAT-AS1 Gene

GeneHancer (GH) Regulatory Elements for ZFAT-AS1 Gene

Promoters and enhancers for ZFAT-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I134597 Enhancer 0.6 ENCODE 550.8 +0.7 716 2.7 ZNF687 SMAD5 USF2 TRIM22 EBF1 ATF2 MITF POLR2A IKZF1 ZBTB33 ENSG00000277732 ENSG00000278454 ZFAT-AS1 ENSG00000276140 ZFAT
GH08I134600 Enhancer 0.8 ENCODE 0.8 +3.7 3720 2.8 PKNOX1 FOXA2 SMAD1 RB1 BMI1 YBX1 BATF IRF4 RAD21 ZNF143 ENSG00000278454 ZFAT-AS1 GC08M134657 ZFAT
GH08I134580 Enhancer 0.6 ENCODE 0.4 -16.5 -16463 1.8 JUN REST FOXA1 JUND FOS HNF4A FOSL2 NFE2 SPI1 ZFAT ENSG00000276140 ZFAT-AS1 GC08M134553
GH08I134572 Enhancer 0.7 ENCODE 0.3 -24.7 -24749 1.8 TAF1 MAX EBF1 BATF RAD21 YY1 ZNF316 NFATC1 HNF4G NFE2 ZFAT GC08M134553 ENSG00000276140 ZFAT-AS1
GH08I134593 Enhancer 0.2 ENCODE 0.8 -4.2 -4178 0.2 ENSG00000276140 ZFAT-AS1 GC08M134553 ZFAT
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ZFAT-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ZFAT-AS1 Gene

Genomic Locations for ZFAT-AS1 Gene
chr8:134,598,071-134,600,689
(GRCh38/hg38)
Size:
2,619 bases
Orientation:
Plus strand
chr8:135,610,314-135,612,932
(GRCh37/hg19)

Genomic View for ZFAT-AS1 Gene

Genes around ZFAT-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZFAT-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZFAT-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZFAT-AS1 Gene

Proteins for ZFAT-AS1 Gene

Post-translational modifications for ZFAT-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZFAT-AS1 Gene

Domains & Families for ZFAT-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZFAT-AS1 Gene

Function for ZFAT-AS1 Gene

Phenotypes From GWAS Catalog for ZFAT-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZFAT-AS1 Gene

Localization for ZFAT-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZFAT-AS1 Gene

Pathways & Interactions for ZFAT-AS1 Gene

SuperPathways for ZFAT-AS1 Gene

No Data Available

Interacting Proteins for ZFAT-AS1 Gene

Gene Ontology (GO) - Biological Process for ZFAT-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZFAT-AS1 Gene

Drugs & Compounds for ZFAT-AS1 Gene

No Compound Related Data Available

Transcripts for ZFAT-AS1 Gene

mRNA/cDNA for ZFAT-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZFAT-AS1 Gene

ZFAT antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZFAT-AS1 Gene

No ASD Table

Relevant External Links for ZFAT-AS1 Gene

GeneLoc Exon Structure for
ZFAT-AS1
ECgene alternative splicing isoforms for
ZFAT-AS1

Expression for ZFAT-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZFAT-AS1 Gene

SOURCE GeneReport for Unigene cluster for ZFAT-AS1 Gene:

Hs.626298
genes like me logo Genes that share expression patterns with ZFAT-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZFAT-AS1 Gene

Orthologs for ZFAT-AS1 Gene

Evolution for ZFAT-AS1 Gene

ENSEMBL:
Gene Tree for ZFAT-AS1 (if available)
TreeFam:
Gene Tree for ZFAT-AS1 (if available)

No data available for Orthologs for ZFAT-AS1 Gene

Paralogs for ZFAT-AS1 Gene

No data available for Paralogs for ZFAT-AS1 Gene

Variants for ZFAT-AS1 Gene

Sequence variations from dbSNP and Humsavar for ZFAT-AS1 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000049334 -- 134,599,444(+) T/C intron_variant
rs1000547650 -- 134,599,798(+) AGTTAG/AG intron_variant
rs1001009806 -- 134,600,955(+) A/T downstream_transcript_variant
rs1001084678 -- 134,598,910(+) C/T intron_variant
rs1003061079 -- 134,600,766(+) C/T downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ZFAT-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2660261 CNV deletion 23128226
nsv612335 CNV loss 21841781

Additional Variant Information for ZFAT-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZFAT-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ZFAT-AS1 Gene

Disorders for ZFAT-AS1 Gene

Additional Disease Information for ZFAT-AS1

No disorders were found for ZFAT-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZFAT-AS1 Gene

Publications for ZFAT-AS1 Gene

  1. A genome-wide approach reveals novel imprinted genes expressed in the human placenta. (PMID: 22894909) Barbaux S … Vaiman D (Epigenetics 2012) 2 3 58
  2. SNPs in the promoter of a B cell-specific antisense transcript, SAS-ZFAT, determine susceptibility to autoimmune thyroid disease. (PMID: 15294872) Shirasawa S … Sasazuki T (Human molecular genetics 2004) 2 3 58

Products for ZFAT-AS1 Gene

Sources for ZFAT-AS1 Gene

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