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Aliases for ZC3H18-AS1 Gene

Subcategory (RNA class) for ZC3H18-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for ZC3H18-AS1 Gene

  • ZC3H18 Antisense RNA 1 (Head To Head) 2 3
  • Long Intergenic Non-Protein Coding RNA 859 2 3
  • Chromosome 16 Open Reading Frame 85 2
  • LINC00859 3
  • C16orf85 3

External Ids for ZC3H18-AS1 Gene

Previous HGNC Symbols for ZC3H18-AS1 Gene

  • C16orf85
  • LINC00859

Previous GeneCards Identifiers for ZC3H18-AS1 Gene

  • GC16U901687

Summaries for ZC3H18-AS1 Gene

GeneCards Summary for ZC3H18-AS1 Gene

ZC3H18-AS1 (ZC3H18 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ZC3H18-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZC3H18-AS1 Gene

Genomics for ZC3H18-AS1 Gene

GeneHancer (GH) Regulatory Elements for ZC3H18-AS1 Gene

Promoters and enhancers for ZC3H18-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I088566 Enhancer 0.6 ENCODE 550.8 +0.7 718 0.2 PKNOX1 RFX1 BMI1 ZFHX2 EGR1 KLF9 FOS EGR2 ZC3H18-AS1 LOC100128882
GH16I088561 Enhancer 1 Ensembl ENCODE 0.4 +5.1 5086 0.8 CTCF ATF1 RB1 ARID4B EBF1 RAD21 TEAD3 ARID2 PATZ1 VEZF1 ZC3H18-AS1 LOC100128882
GH16I088529 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.3 +34.7 34679 6.7 HDAC1 CLOCK SMAD1 RB1 SIN3A TCF12 ZNF766 GLIS2 ELK1 ZNF143 LOC100128882 ZC3H18-AS1 ZFPM1
GH16I088559 Enhancer 0.8 ENCODE 0.4 +7.9 7918 0.2 HDAC1 PKNOX1 SMAD1 RB1 NFIB ARID4B SIN3A ZNF2 RAD21 ETS1 ZC3H18-AS1 LOC100128882
GH16I088550 Enhancer 0.7 Ensembl 0.4 +16.8 16805 0.6 CTCF ELF3 SAP130 MLX RARA POLR2A NR2F6 THAP11 GATAD2A SP5 ZFPM1 LOC100128882 IL17C ZC3H18-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ZC3H18-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ZC3H18-AS1 Gene

Genomic Locations for ZC3H18-AS1 Gene
chr16:88,554,002-88,567,106
(GRCh38/hg38)
Size:
13,105 bases
Orientation:
Minus strand

Genomic View for ZC3H18-AS1 Gene

Genes around ZC3H18-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZC3H18-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZC3H18-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZC3H18-AS1 Gene

Proteins for ZC3H18-AS1 Gene

Post-translational modifications for ZC3H18-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZC3H18-AS1 Gene

Domains & Families for ZC3H18-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZC3H18-AS1 Gene

Function for ZC3H18-AS1 Gene

Phenotypes for ZC3H18-AS1 Gene

GenomeRNAi human phenotypes for ZC3H18-AS1:
genes like me logo Genes that share phenotypes with ZC3H18-AS1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZC3H18-AS1 Gene

Localization for ZC3H18-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ZC3H18-AS1 gene
Compartment Confidence
mitochondrion 2
nucleus 2
cytosol 2
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZC3H18-AS1 Gene

Pathways & Interactions for ZC3H18-AS1 Gene

SuperPathways for ZC3H18-AS1 Gene

No Data Available

Interacting Proteins for ZC3H18-AS1 Gene

Gene Ontology (GO) - Biological Process for ZC3H18-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZC3H18-AS1 Gene

Drugs & Compounds for ZC3H18-AS1 Gene

No Compound Related Data Available

Transcripts for ZC3H18-AS1 Gene

mRNA/cDNA for ZC3H18-AS1 Gene

(1) REFSEQ mRNAs :
(5) Selected AceView cDNA sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZC3H18-AS1 Gene

No ASD Table

Relevant External Links for ZC3H18-AS1 Gene

GeneLoc Exon Structure for
ZC3H18-AS1
ECgene alternative splicing isoforms for
ZC3H18-AS1

Expression for ZC3H18-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZC3H18-AS1 Gene

mRNA expression in normal human tissues for ZC3H18-AS1 Gene

Protein differential expression in normal tissues from HIPED for ZC3H18-AS1 Gene

This gene is overexpressed in Plasma (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for ZC3H18-AS1 Gene



Protein tissue co-expression partners for ZC3H18-AS1 Gene

genes like me logo Genes that share expression patterns with ZC3H18-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZC3H18-AS1 Gene

Orthologs for ZC3H18-AS1 Gene

No data available for Orthologs and Evolution for ZC3H18-AS1 Gene

Paralogs for ZC3H18-AS1 Gene

No data available for Paralogs for ZC3H18-AS1 Gene

Variants for ZC3H18-AS1 Gene

Sequence variations from dbSNP and Humsavar for ZC3H18-AS1 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000055126 -- 88,563,844(-) C/T genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1000183139 -- 88,563,550(-) A/C genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1000482030 -- 88,565,858(-) G/A genic_upstream_transcript_variant, intron_variant
rs1000513632 -- 88,564,020(-) G/A genic_upstream_transcript_variant, intron_variant
rs1000611219 -- 88,557,100(-) G/A genic_downstream_transcript_variant, intron_variant

Additional Variant Information for ZC3H18-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZC3H18-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ZC3H18-AS1 Gene

Disorders for ZC3H18-AS1 Gene

Additional Disease Information for ZC3H18-AS1

No disorders were found for ZC3H18-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZC3H18-AS1 Gene

Publications for ZC3H18-AS1 Gene

No publications were found for ZC3H18-AS1 Gene.

Products for ZC3H18-AS1 Gene

Sources for ZC3H18-AS1 Gene

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