Aliases for ZC3H18-AS1 Gene

Subcategory (RNA class) for ZC3H18-AS1 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ZC3H18-AS1 Gene

  • ZC3H18 Antisense RNA 1 (Head To Head) 2 3
  • Long Intergenic Non-Protein Coding RNA 859 2 3
  • Chromosome 16 Open Reading Frame 85 2
  • NONHSAG020286.2 91
  • Lnc-CYBA-4 165
  • ZC3H18-AS1 2
  • LINC00859 3
  • C16orf85 3
  • FLJ45530 2

External Ids for ZC3H18-AS1 Gene

Previous HGNC Symbols for ZC3H18-AS1 Gene

  • C16orf85
  • LINC00859

Previous GeneCards Identifiers for ZC3H18-AS1 Gene

  • GC16U901687

Summaries for ZC3H18-AS1 Gene

GeneCards Summary for ZC3H18-AS1 Gene

ZC3H18-AS1 (ZC3H18 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ZC3H18-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ZC3H18-AS1 Gene

Genomics for ZC3H18-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ZC3H18-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J088569 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 -0.4 -425 2.8 SP1 CREB1 ZNF629 TFE3 SIX5 LEF1 NFKBIZ POLR2A ZNF692 BACH1 ZC3H18 ZC3H18-AS1 lnc-CYBA-4 piR-37138 IL17C HSALNG0113518
GH16J088566 Enhancer 0.8 Ensembl ENCODE 0.7 +3.9 3875 1 RFX1 FOXA1 PKNOX1 KLF9 EGR1 BMI1 ZFHX2 GATA3 ZNF384 KLF10 lnc-ZC3H18-1 CYBA ZC3H18 ZC3H18-AS1 lnc-CYBA-4 RF00017-2191 ZFPM1
GH16J088559 Enhancer 1 Ensembl ENCODE 0.4 +11.0 10976 1.2 CTCF REST PKNOX1 RXRB SP1 HDAC1 ETS1 MTA3 SMARCA5 CTBP1 ENSG00000260671 IL17C lnc-ZC3H18-1 ZC3H18 ZC3H18-AS1 lnc-CYBA-4 RF00017-2191 ZFPM1
GH16J088561 Enhancer 0.7 ENCODE 0.4 +8.0 8048 0.2 CTCF REST RAD21 ZNF740 ZNF600 CBX3 ZNF444 CHD2 SMC3 ZBTB25 lnc-ZC3H18-1 ZC3H18 ZC3H18-AS1 lnc-CYBA-4 RF00017-2191 ZFPM1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ZC3H18-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ZC3H18-AS1 Gene

Genomic Locations for ZC3H18-AS1 Gene
chr16:88,559,558-88,570,176
(GRCh38/hg38)
Size:
10,619 bases
Orientation:
Minus strand

Genomic View for ZC3H18-AS1 Gene

Genes around ZC3H18-AS1 on UCSC Golden Path with GeneCards custom track
ZC3H18-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ZC3H18-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZC3H18-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZC3H18-AS1 Gene

Proteins for ZC3H18-AS1 Gene

Post-translational modifications for ZC3H18-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZC3H18-AS1 Gene

Domains & Families for ZC3H18-AS1 Gene

Gene Families for ZC3H18-AS1 Gene

genes like me logo Genes that share domains with ZC3H18-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ZC3H18-AS1 Gene

Function for ZC3H18-AS1 Gene

Phenotypes for ZC3H18-AS1 Gene

genes like me logo Genes that share phenotypes with ZC3H18-AS1: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ZC3H18-AS1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZC3H18-AS1 Gene

Localization for ZC3H18-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZC3H18-AS1 Gene

Pathways & Interactions for ZC3H18-AS1 Gene

PathCards logo

SuperPathways for ZC3H18-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ZC3H18-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ZC3H18-AS1 Gene

Drugs & Compounds for ZC3H18-AS1 Gene

No Compound Related Data Available

Transcripts for ZC3H18-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ZC3H18-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000BC44B2_9606 lncRNA 1224 2

HGNC: 33799,

RefSeq: NR_146877,

URS00008B3955_9606 lncRNA 316 2

LNCipedia: lnc-CYBA-4:4,

NONCODE: NONHSAT144386.2,

URS0000D577BC_9606 lncRNA 4953 1

LNCipedia: lnc-CYBA-4:3,

ZC3H18-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ZC3H18-AS1 Gene

1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ZC3H18-AS1

Alternative Splicing Database (ASD) splice patterns (SP) for ZC3H18-AS1 Gene

No ASD Table

Relevant External Links for ZC3H18-AS1 Gene

GeneLoc Exon Structure for
ZC3H18-AS1

Expression for ZC3H18-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ZC3H18-AS1 Gene

mRNA expression in normal human tissues for ZC3H18-AS1 Gene

Protein differential expression in normal tissues from HIPED for ZC3H18-AS1 Gene

This gene is overexpressed in Plasma (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for ZC3H18-AS1 Gene



Protein tissue co-expression partners for ZC3H18-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ZC3H18-AS1

genes like me logo Genes that share expression patterns with ZC3H18-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZC3H18-AS1 Gene

Orthologs for ZC3H18-AS1 Gene

No data available for Orthologs and Evolution for ZC3H18-AS1 Gene

Paralogs for ZC3H18-AS1 Gene

No data available for Paralogs for ZC3H18-AS1 Gene

Variants for ZC3H18-AS1 Gene

Additional dbSNP identifiers (rs#s) for ZC3H18-AS1 Gene

Additional Variant Information for ZC3H18-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZC3H18-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ZC3H18-AS1 Gene

Disorders for ZC3H18-AS1 Gene

Additional Disease Information for ZC3H18-AS1

No disorders were found for ZC3H18-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZC3H18-AS1 Gene

Publications for ZC3H18-AS1 Gene

No publications were found for ZC3H18-AS1 Gene.

Products for ZC3H18-AS1 Gene

Sources for ZC3H18-AS1 Gene