Aliases for ZC3H11B Gene

Aliases for ZC3H11B Gene

  • Zinc Finger CCCH-Type Containing 11B 2 3 5
  • Zinc Finger CCCH Domain-Containing Protein 11B 3 4
  • ZC3HDC11B 3 4
  • Zinc Finger CCCH-Type Containing 11B Pseudogene 2
  • Zinc Finger CCCH-Type Domain Containing 11B 3
  • ZC3H11B 5

External Ids for ZC3H11B Gene

Previous HGNC Symbols for ZC3H11B Gene

  • ZC3HDC11B

Previous GeneCards Identifiers for ZC3H11B Gene

  • GC01M216170
  • GC01U901371
  • GC01M217848
  • GC01M219781
  • GC01M190452

Summaries for ZC3H11B Gene

GeneCards Summary for ZC3H11B Gene

ZC3H11B (Zinc Finger CCCH-Type Containing 11B) is a Protein Coding gene. An important paralog of this gene is ZC3H11A.

UniProtKB/Swiss-Prot Summary for ZC3H11B Gene

Additional gene information for ZC3H11B Gene

No data available for Entrez Gene Summary , CIViC Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ZC3H11B Gene

Genomics for ZC3H11B Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ZC3H11B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J219612 Promoter 0.3 Ensembl 600.7 +0.1 144 0.4 ZC3H11B lnc-ZC3H11B-9 LYPLAL1
GH01J220044 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 25 -433.0 -432955 3.4 SP1 CREB1 GATAD2A CTCF PRDM10 ZNF629 TFE3 LEF1 NFKBIZ KDM1A EPRS1 lnc-EPRS-1 ZC3H11B RPS15AP12 lnc-IARS2-2 SLC30A10
GH01J219902 Enhancer 1.2 Ensembl ENCODE 25.1 -292.8 -292782 6.1 RNF2 ARHGAP35 ZNF512 LEF1 IKZF1 JUND DDX20 MTA2 PHF21A PKNOX1 lnc-EPRS-4 ZC3H11B SLC30A10 ENSG00000221673 RPS15AP12 piR-57195-025
GH01J220088 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 12.6 -476.6 -476555 3 ARHGAP35 SP1 CREB1 GATAD2A HNRNPL TEAD4 PRDM10 REST ZNF629 TFE3 BPNT1 lnc-EPRS-2 RPS15AP12 ZC3H11B RIMKLBP2 EPRS1 RAB3GAP2 piR-57138-016
GH01J219925 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 12.6 -314.5 -314501 3.6 GATAD2A HNRNPL REST ZNF512 NFKBIZ ZNF692 RCOR2 JUND MTA2 ZIC2 LOC107985281 SLC30A10 RPS15AP12 ZC3H11B RIMKLBP2 piR-48820-010
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ZC3H11B on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for ZC3H11B

Genomic Locations for ZC3H11B Gene

Genomic Locations for ZC3H11B Gene
chr1:219,608,010-219,613,145
(GRCh38/hg38)
Size:
5,136 bases
Orientation:
Minus strand
chr1:219,781,269-219,786,487
(GRCh37/hg19)
Size:
5,219 bases
Orientation:
Minus strand

Genomic View for ZC3H11B Gene

Genes around ZC3H11B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZC3H11B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZC3H11B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZC3H11B Gene

Proteins for ZC3H11B Gene

  • Protein details for ZC3H11B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A0A1B0GTU1-ZC11B_HUMAN
    Recommended name:
    Zinc finger CCCH domain-containing protein 11B
    Protein Accession:
    A0A1B0GTU1

    Protein attributes for ZC3H11B Gene

    Size:
    805 amino acids
    Molecular mass:
    88937 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ZC3H11B Gene

Post-translational modifications for ZC3H11B Gene

No Post-translational modifications

Other Protein References for ZC3H11B Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ZC3H11B Gene

Domains & Families for ZC3H11B Gene

Gene Families for ZC3H11B Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for ZC3H11B Gene

InterPro:
ProtoNet:
genes like me logo Genes that share domains with ZC3H11B: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ZC3H11B Gene

Function for ZC3H11B Gene

Molecular function for ZC3H11B Gene

UniProtKB/Swiss-Prot Function:
May play a role in mRNA transport.

Phenotypes From GWAS Catalog for ZC3H11B Gene

Gene Ontology (GO) - Molecular Function for ZC3H11B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003729 mRNA binding IBA 21873635
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZC3H11B: view

miRNA for ZC3H11B Gene

miRTarBase miRNAs that target ZC3H11B

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ZC3H11B Gene

Localization for ZC3H11B Gene

Subcellular locations from the

Human Protein Atlas (HPA)
  • Nuclear speckles (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for ZC3H11B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000346 colocalizes_with transcription export complex IBA 21873635
genes like me logo Genes that share ontologies with ZC3H11B: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for ZC3H11B Gene

Pathways & Interactions for ZC3H11B Gene

PathCards logo

SuperPathways for ZC3H11B Gene

No Data Available

Interacting Proteins for ZC3H11B Gene

Gene Ontology (GO) - Biological Process for ZC3H11B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016973 poly(A)+ mRNA export from nucleus IBA 21873635
genes like me logo Genes that share ontologies with ZC3H11B: view

No data available for Pathways by source and SIGNOR curated interactions for ZC3H11B Gene

Drugs & Compounds for ZC3H11B Gene

No Compound Related Data Available

Transcripts for ZC3H11B Gene

mRNA/cDNA for ZC3H11B Gene

2 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ZC3H11B Gene

No ASD Table

Relevant External Links for ZC3H11B Gene

GeneLoc Exon Structure for
ZC3H11B

Expression for ZC3H11B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ZC3H11B Gene

genes like me logo Genes that share expression patterns with ZC3H11B: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZC3H11B Gene

Orthologs for ZC3H11B Gene

Evolution for ZC3H11B Gene

ENSEMBL:
Gene Tree for ZC3H11B (if available)
TreeFam:
Gene Tree for ZC3H11B (if available)

No data available for Orthologs for ZC3H11B Gene

Paralogs for ZC3H11B Gene

Paralogs for ZC3H11B Gene

genes like me logo Genes that share paralogs with ZC3H11B: view

Variants for ZC3H11B Gene

Additional dbSNP identifiers (rs#s) for ZC3H11B Gene

Additional Variant Information for ZC3H11B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZC3H11B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ZC3H11B Gene

Disorders for ZC3H11B Gene

Additional Disease Information for ZC3H11B

No disorders were found for ZC3H11B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZC3H11B Gene

Publications for ZC3H11B Gene

  1. Association between Ocular Axial Length-Related Genes and High Myopia in a Han Chinese Population. (PMID: 26485405) Li YT … Wu J (Ophthalmologica. Journal international d'ophtalmologie. International journal of ophthalmology. Zeitschrift fur Augenheilkunde 2016) 3
  2. Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error. (PMID: 24144296) Cheng CY … Baird PN (American journal of human genetics 2013) 3
  3. Sex-stratified genome-wide association studies including 270,000 individuals show sexual dimorphism in genetic loci for anthropometric traits. (PMID: 23754948) Randall JC … Heid IM (PLoS genetics 2013) 3
  4. Genetic variants on chromosome 1q41 influence ocular axial length and high myopia. (PMID: 22685421) Fan Q … Saw SM (PLoS genetics 2012) 3
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. (PMID: 21873635) Gaudet P … Thomas PD (Briefings in bioinformatics 2011) 3

Products for ZC3H11B Gene

Sources for ZC3H11B Gene