Aliases for ZBTB44-DT Gene

Data sources for ZBTB44-DT Gene:

Subcategory (RNA class) for ZBTB44-DT Gene

lncRNA

Aliases for ZBTB44-DT Gene

External Ids for ZBTB44-DT Gene

Summaries for ZBTB44-DT Gene

GeneCards Summary for ZBTB44-DT Gene

ZBTB44-DT (ZBTB44 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ZBTB44-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ZBTB44-DT Gene

Genomics for ZBTB44-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ZBTB44-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J130312 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 250.7 +0.1 66 4 TBP CEBPA BHLHE40 NONO CEBPB SIN3A CTCF HCFC1 VEZF1 SMAD4 ZBTB44 HSALNG0088213 ZBTB44-DT ST14
GH11J129374 Promoter/Enhancer 1.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11 -938.8 -938822 5.8 ZBTB10 CTCF ELF1 ZIC2 ZNF341 SMC3 YY1 BCL6 BCL11B PRDM6 BARX2 HSALNG0088151 piR-45228 ZBTB44-DT TMEM45B
GH11J130400 Promoter/Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.4 +88.1 88060 4.9 ETS1 SIN3A SPI1 MAFK TAF1 ATF2 SP1 PRDM4 POU5F1 CHD1 lnc-ADAMTS8-1 ZBTB44-DT ADAMTS8 ZBTB44
GH11J130407 Enhancer 0.8 Ensembl ENCODE dbSUPER 8.2 +94.6 94578 3 FEZF1 FOS NFIC ZNF184 LINC02551 ENSG00000255455 ADAMTS15 ZBTB44-DT lnc-ADAMTS8-1 ADAMTS8 ZBTB44
GH11J130388 Enhancer 0.8 ENCODE dbSUPER 6 +75.2 75206 2.7 CEBPA CTCF FOXA2 RAD21 RARA TEAD3 HMG20A BHLHE40 ARID3A NFIL3 ADAMTS8 ADAMTS15 ZBTB44-DT lnc-ADAMTS8-1 piR-39098-044 ZBTB44
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ZBTB44-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ZBTB44-DT Gene

Latest Assembly
chr11:130,314,523-130,446,168
(GRCh38/hg38)
Size:
131,646 bases
Orientation:
Plus strand

Previous Assembly
chr11:130,184,888-130,273,552
(GRCh37/hg19 by Entrez Gene)
Size:
88,665 bases
Orientation:
Plus strand

chr11:130,184,888-130,263,688
(GRCh37/hg19 by Ensembl)
Size:
78,801 bases
Orientation:
Plus strand

Genomic View for ZBTB44-DT Gene

Genes around ZBTB44-DT on UCSC Golden Path with GeneCards custom track
ZBTB44-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ZBTB44-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZBTB44-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZBTB44-DT Gene

Proteins for ZBTB44-DT Gene

Post-translational modifications for ZBTB44-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZBTB44-DT Gene

Domains & Families for ZBTB44-DT Gene

Gene Families for ZBTB44-DT Gene

genes like me logo Genes that share domains with ZBTB44-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ZBTB44-DT Gene

Function for ZBTB44-DT Gene

Phenotypes From GWAS Catalog for ZBTB44-DT Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZBTB44-DT Gene

Localization for ZBTB44-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZBTB44-DT Gene

Pathways & Interactions for ZBTB44-DT Gene

PathCards logo

SuperPathways for ZBTB44-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for ZBTB44-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ZBTB44-DT Gene

Drugs & Compounds for ZBTB44-DT Gene

No Compound Related Data Available

Transcripts for ZBTB44-DT Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ZBTB44-DT Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000775B74_9606 lncRNA 1769 4

Ensembl: ENST00000602376 (view in UCSC) ,

LncBook: HSALNT0183424,

LNCipedia: lnc-ADAMTS15-1:10,

NONCODE: NONHSAT159898.1,

URS000076A4EB_9606 lncRNA 415 4

Ensembl: ENST00000616197 (view in UCSC) ,

LncBook: HSALNT0183443,

LNCipedia: lnc-ADAMTS15-1:24,

NONCODE: NONHSAT159899.1,

URS0000334B32_9606 lncRNA 330 4

Ensembl: ENST00000602310 (view in UCSC) ,

LncBook: HSALNT0183430,

LNCipedia: lnc-ADAMTS15-1:13,

NONCODE: NONHSAT025127.2,

URS00005FD333_9606 lncRNA 669 3

Ensembl: ENST00000532116 (view in UCSC) ,

LncBook: HSALNT0183428,

LNCipedia: lnc-ADAMTS15-1:12,

URS0000BC44D8_9606 lncRNA 968 1

RefSeq: NR_148980,

ZBTB44-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ZBTB44-DT Gene

1 REFSEQ mRNAs :
6 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for ZBTB44-DT Gene

No ASD Table

Relevant External Links for ZBTB44-DT Gene

GeneLoc Exon Structure for
ZBTB44-DT

Expression for ZBTB44-DT Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ZBTB44-DT

No Expression Related Data Available

Primer products for research

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZBTB44-DT Gene

Orthologs for ZBTB44-DT Gene

Evolution for ZBTB44-DT Gene

ENSEMBL:
Gene Tree for ZBTB44-DT (if available)
TreeFam:
Gene Tree for ZBTB44-DT (if available)

No data available for Orthologs for ZBTB44-DT Gene

Paralogs for ZBTB44-DT Gene

No data available for Paralogs for ZBTB44-DT Gene

Variants for ZBTB44-DT Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for ZBTB44-DT Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for ZBTB44-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZBTB44-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ZBTB44-DT Gene

Disorders for ZBTB44-DT Gene

No disorders were found for ZBTB44-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ZBTB44-DT Gene

Publications for ZBTB44-DT Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for ZBTB44-DT Gene

Products for ZBTB44-DT Gene

Sources for ZBTB44-DT Gene