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Aliases for ZBTB40-IT1 Gene

Subcategory (RNA class) for ZBTB40-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for ZBTB40-IT1 Gene

  • ZBTB40 Intronic Transcript 1 2 3 5
  • ZBTB40 Intronic Transcript 1 (Non-Protein Coding) 2 3

External Ids for ZBTB40-IT1 Gene

Previous GeneCards Identifiers for ZBTB40-IT1 Gene

  • GC00U933731
  • GC01P022844

Summaries for ZBTB40-IT1 Gene

GeneCards Summary for ZBTB40-IT1 Gene

ZBTB40-IT1 (ZBTB40 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ZBTB40-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZBTB40-IT1 Gene

Genomics for ZBTB40-IT1 Gene

GeneHancer (GH) Regulatory Elements for ZBTB40-IT1 Gene

Promoters and enhancers for ZBTB40-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J021779 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 9.7 -734.9 -734940 6.2 MLX DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 MEF2D USP48 ZBTB40 CDC42-IT1 HP1BP3 ENSG00000271428 NBPF3 CDC42 EIF4G3 NBPF2P ZBTB40-IT1
GH01J023339 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 9.7 +825.5 825529 6.3 HDGF PKNOX1 SMAD1 FOXA2 ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B HNRNPR ZNF436-AS1 ZNF436 ZBTB40 KDM1A ENSG00000201405 SRSF10 ELOA ZBTB40-IT1 TCEA3
GH01J022023 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 9.7 -491.7 -491736 3.8 FEZF1 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 ZNF263 SP3 MEF2D LINC00339 LINC01635 ZBTB40 CDC42-IT1 KDM1A USP48 ENSG00000271428 NBPF3 HSPG2 CDC42
GH01J023098 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.1 +584.4 584365 6.8 HDGF PKNOX1 ARNT ZFP64 ARID4B ZNF2 E2F8 ZNF143 FOS REST LUZP1 SRSF10 LINC01355 HNRNPR ZBTB40 RNU6-135P RNU6-514P RPL11 LACTBL1 ELOA
GH01J022509 Enhancer 0.3 FANTOM5 0.4 -7.4 -7398 0.2 GC01P022509 ZBTB40 ZBTB40-IT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ZBTB40-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ZBTB40-IT1 Gene

Genomic Locations for ZBTB40-IT1 Gene
chr1:22,517,474-22,519,708
(GRCh38/hg38)
Size:
2,235 bases
Orientation:
Plus strand
chr1:22,843,967-22,846,201
(GRCh37/hg19)

Genomic View for ZBTB40-IT1 Gene

Genes around ZBTB40-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZBTB40-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZBTB40-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ZBTB40-IT1 Gene

Proteins for ZBTB40-IT1 Gene

Post-translational modifications for ZBTB40-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZBTB40-IT1 Gene

Domains & Families for ZBTB40-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZBTB40-IT1 Gene

Function for ZBTB40-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZBTB40-IT1 Gene

Localization for ZBTB40-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZBTB40-IT1 Gene

Pathways & Interactions for ZBTB40-IT1 Gene

SuperPathways for ZBTB40-IT1 Gene

No Data Available

Interacting Proteins for ZBTB40-IT1 Gene

Gene Ontology (GO) - Biological Process for ZBTB40-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZBTB40-IT1 Gene

Drugs & Compounds for ZBTB40-IT1 Gene

No Compound Related Data Available

Transcripts for ZBTB40-IT1 Gene

mRNA/cDNA for ZBTB40-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZBTB40-IT1 Gene

No ASD Table

Relevant External Links for ZBTB40-IT1 Gene

GeneLoc Exon Structure for
ZBTB40-IT1
ECgene alternative splicing isoforms for
ZBTB40-IT1

Expression for ZBTB40-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZBTB40-IT1 Gene

genes like me logo Genes that share expression patterns with ZBTB40-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZBTB40-IT1 Gene

Orthologs for ZBTB40-IT1 Gene

Evolution for ZBTB40-IT1 Gene

ENSEMBL:
Gene Tree for ZBTB40-IT1 (if available)
TreeFam:
Gene Tree for ZBTB40-IT1 (if available)

No data available for Orthologs for ZBTB40-IT1 Gene

Paralogs for ZBTB40-IT1 Gene

No data available for Paralogs for ZBTB40-IT1 Gene

Variants for ZBTB40-IT1 Gene

Additional Variant Information for ZBTB40-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZBTB40-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ZBTB40-IT1 Gene

Disorders for ZBTB40-IT1 Gene

No disorders were found for ZBTB40-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ZBTB40-IT1 Gene

Publications for ZBTB40-IT1 Gene

  1. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 58

Products for ZBTB40-IT1 Gene

Sources for ZBTB40-IT1 Gene

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